denisshepelin
CPH BioScience 2021 Alumni, interested in synthetic biology, metabolic engineering and probabilistic programming. Currently DS/ML @ LabTwin
@labtwin-gmbh Berlin, Germany
Pinned Repositories
Maud
Enzyme models that take into account kinetics, allostery and thermodynamics
CFU_analysis
cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
EcoliKineticBenchmark
This repository contains code to replicate study-benchmark of published E. coli kinetic metabolic models
escher
Build, share, and embed visualizations of metabolic pathways.
Genomic-ULMFiT
ULMFiT for Genomic Sequence Data
maudeller
Tooling to support Maud kinetic modeling package
ooc-bignum
BigNums for ooc . It uses gmp lib
ooc-gedit-support
Some integration ooc languge into gEdit
sample-code
Sample code for The Imposter's Handbook
denisshepelin's Repositories
denisshepelin/ooc-gedit-support
Some integration ooc languge into gEdit
denisshepelin/CFU_analysis
denisshepelin/cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
denisshepelin/EcoliKineticBenchmark
This repository contains code to replicate study-benchmark of published E. coli kinetic metabolic models
denisshepelin/escher
Build, share, and embed visualizations of metabolic pathways.
denisshepelin/Genomic-ULMFiT
ULMFiT for Genomic Sequence Data
denisshepelin/maudeller
Tooling to support Maud kinetic modeling package
denisshepelin/ooc-bignum
BigNums for ooc . It uses gmp lib
denisshepelin/sample-code
Sample code for The Imposter's Handbook
denisshepelin/UniRep
UniRep model, usage, and examples.