Phy plugins to help with spikesorting. It contains the following three plugins:
-
n_spikes_view
used to adjust the number of displayed waveforms and recording channels in the WaveformView window. -
recluster
plugin providing multiple reclustering actions:- Recluster PCAs to recluster using klustkwik.
- K means clustering to recluster using klustkwik with specific number of new clusters.
- MahalanobisDist to split off outlier spikes deviating by specified standard deviations in the principal component space.
-
SplitShortISI
plugin providing a reclustering action to split spikes with the inter-spike interval of$\leqslant$ 1.5 ms.
To install plugins, download the contents of this repository (except README
file) and place them inside .phy
folder inside your Windows user directory (C:\Users\<your-username>\.phy
). Subsequently, open phy_config
file and edit it by replacing <your-username>
entry with the actual name of your user directory.
Plugins were originally created by Peter Petersen and Thomas Hainmueller for Phy1.
Adapted for Phy2 by Martynas Dervinis.