Dewey Lab

The research group of Dr. Colin Dewey @ University of Wisconsin-Madison

Madison, WI

Pinned Repositories

cell-type-classification-paper
Code implementing experiments described in "Hierarchical cell type classification using mass, heterogeneous RNA-seq data from human primary cells"
Language:Python5 3 11
CellO
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
Language:Jupyter Notebook65 6 2513
detonate
DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
Language:C++11 5 84
deweylab.github.io
The deweylab website
Language:HTML1 3 00
MetaSRA-API-backend
MetaSRA API + website back-end
Language:Python0 4 60
MetaSRA-pipeline
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
Language:Python42 4 27614
MetaSRA-website-frontend
MetaSRA: normalized metadata for the Sequence Read Archive
Language:HTML1 4 400
RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Language:C++424 22 198118

deweylab/RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Language:C++424 22 198118
deweylab/CellO
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
Language:Jupyter Notebook65 6 2513
deweylab/MetaSRA-pipeline
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
Language:Python42 4 27614
deweylab/detonate
DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation
Language:C++11 5 84
deweylab/cell-type-classification-paper
Code implementing experiments described in "Hierarchical cell type classification using mass, heterogeneous RNA-seq data from human primary cells"
Language:Python5 3 11
deweylab/deweylab.github.io
The deweylab website
Language:HTML1 3 00
deweylab/MetaSRA-website-frontend
MetaSRA: normalized metadata for the Sequence Read Archive
Language:HTML1 4 400
deweylab/MetaSRA-API-backend
MetaSRA API + website back-end
Language:Python0 4 60