deweylab/CellO

Issues

• Error after not finding pre-training models (ir.dill)

  #21 opened 2 years ago by ivandatasci
  3

• fix resource download URL

  #29 opened a year ago by carsten-jahn
  1

• Error when Transforming with PCA...

  #20 opened a year ago by ScreachingFire
  4

• Error when install CellO

  #28 opened 2 years ago by Chrisdoan9
  11

• sparsematrix toarray in cello.py

  #27 opened 2 years ago by brainfo
  2

• support layer selection for anndata

  #26 opened 2 years ago by brainfo
  0

• ValueError: Unable to determine gene collection

  #25 opened 2 years ago by tingxie2020
  4

• Understanding assignment of most specific cell type

  #23 opened 2 years ago by LustigePerson
  0

• A little advice

  #19 opened 2 years ago by libmelo
  2

• loop of ufunc does not support argument 0

  #8 opened 2 years ago by mbcouger
  7

• KeyError in scanpy_cello(); most specific cell type not created

  #13 opened 3 years ago by phjanssen
  2

• KeyError: 'leiden' when setting the parameter clust_key

  #14 opened 2 years ago by andreassteffen
  4

• why every cluster is predicted as "oxygen accumulating cell (CL:0000329)"?

  #9 opened 2 years ago by hurleyLi
  3

• Could you provide a ftp link to the CellO resources?

  #17 opened 2 years ago by brainfo
  2

• annotation for other species

  #15 opened 3 years ago by wangjiawen2013
  1

• no output files

  #4 opened 3 years ago by leeyoyohku
  2

• Erroneous assignments on 10k PBMC from 10x

  #12 opened 3 years ago by apredeus
  4

• About the PCA loadings matrix U

  #11 opened 3 years ago by Mingjiang-git
  6

• About preprocessor of PCA in pre-train

  #10 opened 3 years ago by Mingjiang-git
  3

• resources are downloaded even if -f specified

  #6 opened 3 years ago by Jon-bioinfo
  3

• PCA Error

  #7 opened 3 years ago by mbcouger
  4

• InvalidIndexError: Reindexing only valid with uniquely valued Index objects

  #5 opened 3 years ago by akk01
  3

• FileNotFoundError: CellO/resources/trained_models/clr.10x_genes_thresholds.tsv' does not exist

  #3 opened 4 years ago by shinthor
  1

• "else" is missing

  #2 opened 4 years ago by ramonvidal
  1

• NameError: name 'options' is not defined

  #1 opened 4 years ago by ramonvidal
  1