cell-type-classification

There are 20 repositories under cell-type-classification topic.

  • Teichlab/celltypist

    A tool for semi-automatic cell type classification

    Language:Python329812946

  • rezakj/iCellR

    Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

    Language:R121133419

  • ZJUFanLab/scDeepSort

    Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network

    Language:Python10162518

  • nsalomonis/altanalyze

    AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.

    Language:Python100165430

  • deweylab/CellO

    CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

    Language:Jupyter Notebook6562513

  • CahanLab/CellNet

    CellNet: network biology applied to stem cell engineering

    Language:R5382325

  • ruiyi-zhang/scPretrain

    scPretrain: Multi-task self-supervised learning for cell type classification

    Language:Python22115

  • CahanLab/PySingleCellNet

    singleCellNet in Python

    Language:Python14339

  • LucasESBS/scoreCT

    scoreCT: Automated Cell Type Annotation

    Language:Jupyter Notebook14477
  • clustermole

    igordot/clustermole

    Unbiased single-cell transcriptomic data cell type identification

    Language:R13240
  • Cellcano

    marvinquiet/Cellcano

    Supervised cell type identification for scATAC-seq data

    Language:Python124112

  • ZJUFanLab/scDeepSort_performance_comparison

    The source code and results for different methods on annotating external testing datsets of human and mouse.

    Language:R11100

  • biomed-AI/SANGO

    The official implementation for "SANGO".

    Language:Jupyter Notebook9225
  • CimpleG

    CostaLab/CimpleG

    CimpleG, an R package to find (small) CpG signatures.

    Language:R6320

  • ACDBio/GCDPipe

    A pipeline to predict risk genes, implicated cell types and drugs for repurposing based on known risk genes (derived from GWAS) for complex traits.

    Language:Python3200

  • fungenomics/scCoAnnotate

    Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.

    Language:R3000

  • edmerix/UnitSubclassify

    GUI for semi-automatic single neuron classification by cell type

    Language:MATLAB2300

  • WangLab-SINH/BrainCellR

    An R package for cell type nomenclature

    Language:R0201

  • ajitjohnson/IMAAP

    Annotation and Analysis of Multiplexed Imaging Data

    Language:R00

  • lubianat/wiki_vickaryous

    A Flask app for the Vickaryous & Hall 2006 cell type classification

    Language:HTML10