rezakj/iCellR

Issues

• an error message - running the run.knetl

  #37 opened a year ago by MavroLucic
  1

• data.scale question

  #36 opened a year ago by gianfilippo
  2

• can not using the iCellR ni rstudio when the plot setting the interactive =T

  #35 opened 2 years ago by honghh2018
  0

• gg.cor produces incorrect plots

  #34 opened 2 years ago by rohitrrj
  0

• Seeking help to create different types of plots

  #33 opened 3 years ago by Rashidul1990
  3

• no plots available for ADT data when using ADT + HTO

  #32 opened 3 years ago by m3lorra
  0

• Transform my iCellR object into seurat？

  #31 opened 3 years ago by pteromysvolans
  1

• 'replacement has 1 row, data has 0' when creating iCellR object

  #30 opened 3 years ago by lucas-bishop
  3

• How to normalize data with single condition?

  #29 opened 4 years ago by bioysu
  1

• Method for gene-gene correlations

  #28 opened 4 years ago by Yale73
  2

• Can I integrate data with iCellR?

  #27 opened 4 years ago by Midsummer723
  4

• Transform my seurat object into iCellR

  #26 opened 4 years ago by pabloatria18
  5

• VDJ analysis: can I use filtered.contig? Error when I run clono.plot

  #25 opened 4 years ago by france-hub
  3

• conds.to.plot in gene.plot not functional

  #24 opened 4 years ago by joybarrett08
  0

• convert seurat object to iCellR object

  #19 opened 4 years ago by gt7901b
  3

• converting old iCellR object to new object

  #21 opened 4 years ago by joybarrett08
  1

• Labelling cells with cluster

  #23 opened 4 years ago by nicholascwho
  4

• TPM instead of count data & no conditions

  #22 opened 4 years ago by nicholascwho
  2

• VDJ data loading

  #11 opened 4 years ago by jsmoon4
  3

• Ploting colonotypes

  #20 opened 4 years ago by crushseven-7
  4

• Error: cannot allocate vector of size 6288.3 Gb

  #18 opened 4 years ago by jajcobyang
  1

• pseudotime.tree

  #17 opened 4 years ago by Yale73
  2

• Can not run findMarkers

  #15 opened 4 years ago by Yale73
  6

• Can not run the cluster.plot and the run.diff.exp

  #16 opened 4 years ago by Yale73
  5

• qc.stats() missing value where TRUE/FALSE needed

  #7 opened 5 years ago by BioLaoXu
  1

• load10x failed

  #13 opened 5 years ago by jajcobyang
  1

• Memory management problem

  #12 opened 5 years ago by ehcw111
  2

• how to produce a coverage corrected matrix

  #14 opened 5 years ago by JLiLab
  2

• Coloring not working for TSNE and UMAP plots for option color by = "Cluster"

  #6 opened 5 years ago by IkjotSidhu
  4

• Mutual Nearest Neighbor Batch correction not working

  #5 opened 5 years ago by IkjotSidhu
  3

• Possible to cluster based on ADT data alone?

  #4 opened 5 years ago by cpcook1
  1

• data input from other object

  #2 opened 5 years ago by zehualilab
  5

• iCellR object fails to function when using multiple samples with same condition

  #3 opened 5 years ago by IkjotSidhu
  3

• could not generate interactive figures.

  #1 opened 5 years ago by weiliuyuan
  4