pseudotime
There are 15 repositories under pseudotime topic.
rezakj/iCellR
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).
parashardhapola/scarf
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
alexisvdb/singleCellHaystack
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
LiQian-XC/sctour
A deep learning architecture for robust inference and accurate prediction of cellular dynamics
LouisFaure/scFates
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
jr-leary7/scLANE
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
BioBam/scMaSigPro
Implementation of MaSigPro for scRNA-Seq Data
Cai-Lab-at-University-of-Michigan/MiCV
MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.
Starlitnightly/scltnn
A composite regression neural network for latent timing prediction of single-cell RNA-seq data
ardadurmaz/sc_eval
Repository for benchmarking study of scRNA-Seq datasets for clustering and trajectory inference
auroramaurizio/my_RNA_seq_pipelines
my_RNA_seq_pipelines
auroramaurizio/periferal_nerve_injury
Bioinfo scripts for the analyses described in EXPERIMENTAL PROCEDURES section of "Structured wound angiogenesis instructs mesenchymal barrier compartments in the regenerating nerve" manuscript
inesmarais/scRNA-seq-analysis-cornea
Scripts for analysis of transcriptomic data of the developing cornea
mode1990/Pseudotime-downstream-by-ML
This script utilizes Monocle3 for inferring pseudotime and employs gradient boosting machine learning (xgboost) to identify genes predictive of pseudotime. Subsequently, it fits a regression model using these newly identified genes.
Stfort52/NOLAN
TENET refined