import using tximport for the rsem count table to get integers?
marwa38 opened this issue · 0 comments
marwa38 commented
The rsem table doesn't have integers so it is common to use tximport before running differential gene expression dowstream analysis. I am wondering what tximport do in rsem table? what kind of modification?
I am trying to use SARTools (deseq2 method) to get my differential expressed genes but the input count table needs to be an integer so I was thinking to just use round() as I am not sure what tximport modification is doing for the rsem table.