dfguan
Postdoc at Zoology Institute, China Academy of Sciences. Interested in algorithmic design and evolutionary genomics.
No. 1, Beichen West Road, Chaoyang District, Beijing
Pinned Repositories
asset
assembly evaluation tool
cgplot
comparative genome dot plot viewer
deSPI
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
KMC
Fast and frugal disk based k-mer counter
pin_hic
A Hi-C scaffolding method
pins
scaffolding based on Hi-C, 10X linked reads, linkage disequilibrium information.
purge_dups
haplotypic duplication identification tool
rHAT
Pacbio sequence alignment tool, please use "git clone" to copy and use the repository
runner
High Performance Cluster (HPC) runner
satool
SAT format management tool
dfguan's Repositories
dfguan/rHAT
Pacbio sequence alignment tool, please use "git clone" to copy and use the repository
dfguan/arima_mapping
This is a python script of arima_mapping pipeline refer to: https://github.com/ArimaGenomics/mapping_pipeline
dfguan/docs
Slides and Poster and maybe some others
dfguan/Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
dfguan/bash-it
A community Bash framework.
dfguan/gfa1
Library and command-line tool to manipulate assembly graph in the GFA format
dfguan/gfakluge
A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
dfguan/gitview
django-project to gather commits statistics for git projects.
dfguan/htslib
C library for high-throughput sequencing data formats
dfguan/jdbg
dfguan/klib
A standalone and lightweight C library
dfguan/pbwt
Implementation of Positional Burrows-Wheeler Transform for genetic data
dfguan/readNewspaper
dfguan/vcfmerger
A fast and capacious vcf merger.