/mac-dev-playbook

Basic web and app developer Mac setup in Ansible playbooks.

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Mac Development Ansible Playbook

Playbook for configuring Johns Hopkins CMDB laptops, based on https://github.com/i11/mac-dev-playbook

Mac Applications installed

(The following are installed using homebrew cask)

Applications installed from Homebrew

  • git
  • wget
  • numpy
  • scipy
  • matplotlib

From homebrew/science

  • blast
  • samtools
  • bamtools
  • bedtools
  • bedops
  • bcftools
  • vcftools
  • htslib
  • bwa
  • bowtie
  • bowtie2
  • tophat
  • cufflinks
  • mummer
  • clustal-w
  • clustal-omega
  • fasta
  • fastqc
  • hmmer
  • igv
  • igvtools
  • meme
  • quast
  • lastz
  • abyss
  • igraph
  • picard-tools
  • trinity
  • velvet
  • ray
  • augustus
  • spades
  • soapdenovo
  • cegma
  • glimmerhmm
  • gmap-gsnap
  • blasr
  • kraken
  • plink
  • quake
  • snpeff
  • hotspot
  • sratoolkit

From homebrew/python

  • numpy
  • scipy
  • matplotlib
  • pillow

Installed using Python's pip

  • patsy
  • statsmodels
  • cython
  • ipython
  • sympy
  • pandas
  • pymc
  • simpy
  • scikit-image
  • scikit-learn
  • PyX
  • macs2