Pinned Repositories
adcomp
AD computation with Template Model Builder (TMB)
advanced-cplusplus
mse4bias
A management strategy evaluation (MSE) framework for persistent estimation bias in stock assessment
Rpath
R implementation of the mass balance model Ecopath with Ecosim
SEIBMEarlyLife
A spatially explicit individual-based model for fish early life histories
SEIBMFoodWeb
A spatially explicit individual-based food web model for a large ecosystem
SEIBMRiverFish
A spatially explicit (1D) individual-based model for large river fish
SpatioTempFishProduction
Estimation of spatial-temporal variability of fish biomass and production using survey data
spict
Surplus Production model in Continuous Time
TransDynFish
Data and code used in "Transient demographic dynamics of recovering fish populations shaped by past climate variability, harvest, and management"
dgoto2's Repositories
dgoto2/adcomp
AD computation with Template Model Builder (TMB)
dgoto2/mse4bias
A management strategy evaluation (MSE) framework for persistent estimation bias in stock assessment
dgoto2/SEIBMFoodWeb
A spatially explicit individual-based food web model for a large ecosystem
dgoto2/SEIBMRiverFish
A spatially explicit (1D) individual-based model for large river fish
dgoto2/SpatioTempFishProduction
Estimation of spatial-temporal variability of fish biomass and production using survey data
dgoto2/TransDynFish
Data and code used in "Transient demographic dynamics of recovering fish populations shaped by past climate variability, harvest, and management"
dgoto2/bayestestR
:ghost: Utilities for analyzing Bayesian models and posterior distributions
dgoto2/CASAL2
Integrated Population Dynamics Model (Casal2)
dgoto2/example-models
Example models for Stan
dgoto2/FishStatsUtils
Shared resources for spatio-temporal models
dgoto2/FSA
FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.
dgoto2/gadget3
TMB-based gadget implemtation
dgoto2/glmmTMB
glmmTMB
dgoto2/GMACS_Assessment_code
The source code for GMACS
dgoto2/icesDatras
R interface to DATRAS trawl database web services
dgoto2/icesSAG
R interface to Stock Assessment Graphs database web services
dgoto2/mizer
Multi-species size-based ecological modelling in R
dgoto2/r4ss
files for r4ss package
dgoto2/rcpp-gallery
Source code for the Rcpp Gallery website
dgoto2/rethinking
Statistical Rethinking course and book package
dgoto2/RTMB
R bindings to TMB
dgoto2/SAM
Git page for SAM R-package
dgoto2/sdmTMB
:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB
dgoto2/ss3om
Tools to load SS3 outputs and generate grids of model runs for OM conditioning
dgoto2/ss3sim
An R package for stock-assessment simulation with Stock Synthesis
dgoto2/SSS
Simple Stock Synthesis code and examples
dgoto2/Statistical-Methods-Seminar-Series
Repository for code shared be presenters in the EFI hosted Statistical Methods Seminar Series
dgoto2/TropFishR
Tropical Fisheries Analysis with R
dgoto2/VAST
Spatio-temporal analysis of univariate or multivariate data, e.g., standardizing data for multiple species or stages
dgoto2/wham
State-space, age-structured fish stock assessment model