Handling non-ACGT chars

Question

Opened this issue 5 years ago · 2 comments

Illustrate in details how does it work.
And how it handles non ACGT characters.

Answer 1 · 2021-11-17T00:28:44.000Z

kmerDecoder auto converts any non-ACGT character to "A".

Answer 2 · 2021-11-17T13:52:55.000Z

I would suggest ignoring the non-ACGT kmers instead.
Changing the kmers might cause false positive results in some cases e.g. containment use cases