kmers
There are 33 repositories under kmers topic.
jermp/fulgor
Fulgor is a fast and space-efficient colored de Bruijn graph index.
suchapalaver/krust
counts k-mers, written in rust
akcorut/kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
jtnystrom/Discount
Very large scale k-mer counting and analysis on Apache Spark.
slowikj/seqR
fast and comprehensive k-mer counting package
arminZolfaghari/DNA-Sequence-Classification
Analysis of DNA Sequence Classification Using Neural Networks - Bioinformatics Course Project - Winter 2022
BioJulia/KmerAnalysis.jl
K-mer counting algorithms and count-data utilities for the BioJulia framework
OndrejSladky/kmercamel
KmerCamelš« provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
dib-lab/kmerDecoder
Extract kmers, skipmers, minimizers.
hannesbecher/shiny-k-mers
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
bioinfoUQAM/CASTOR_KRFE
Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences
phylo42/RAPPAS
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
suchapalaver/fastas2kmers
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
phylo42/sherpas
Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences
shenwei356/kmers
bit-packed k-mers methods for Golang
moorembioinfo/KmerAperture
Extract SNPs and accessory differences in closely related bacterial genomes from k-mers
GioStamoulos/Kmers_Dataset_Generation_Regression_Clustering
The generation of a kmers dataset that is associated with multiple gene sequences and the further manipulation of this generated dataset are the main contents of the current project.
adamjorr/kbbq
reference-free base quality score recalibration
kcleal/kmerhash
Convert python string to hashed kmers and back again
gabrielecanesi/DNA-SNP-finder
An algorithm for finding SNPs of a long read compared to a reference genome
Gulshan-gaur/NAUniSeq
NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics
maremita/slm_kgenomvir
Evaluation of Statistical Linear Models for Genome Virus Classification
Selvalakshmi27/Kspectra
Generate K-mer spectra to observe modalities of distributions
andriusbern/afp
Alignment-Free phylogenetic tree construction from .fasta sequence files
bissim/bgp-d2
This is our implementation for D2 distance algorithm for k-mers.
maremita/CASTOR_KRFE_v1.0
[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE
panthijeeban/Python-Assignment
Python assignment for my Bio-535 course at URI, Spring 2018.
rupeshsure/DNA-Sequence-Classification-Project
DNA CLASSIFICATION
victoria-r/BioPython
A collection of various biopython scripts.
jermp/fulgor-benchmarks
Benchmarks and evaluation scripts for the Fulgor index.
kalyaniasthana/FindingHiddenMessagesInDNA_BioinformaticsI
Coding problems from course 1 of the Bioinformatics specialization
Louis-MG/META-DIFF
This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.