kmers

akcorut/kGWASflow

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

suchapalaver/krust

Bioinformatics 101 tool for counting unique k-length substrings in DNA

jtnystrom/Discount

Very large scale k-mer counting and analysis on Apache Spark.

slowikj/seqR

fast and comprehensive k-mer counting package

arminZolfaghari/DNA-Sequence-Classification

Analysis of DNA Sequence Classification Using Neural Networks - Bioinformatics Course Project - Winter 2022

hannesbecher/shiny-k-mers

Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)

OndrejSladky/kmercamel

KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.

BioJulia/KmerAnalysis.jl

K-mer counting algorithms and count-data utilities for the BioJulia framework

dib-lab/kmerDecoder

Extract kmers, skipmers, minimizers.

bioinfoUQAM/CASTOR_KRFE

Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

phylo42/RAPPAS

Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

phylo42/sherpas

Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences

shenwei356/kmers

bit-packed k-mers methods for Golang

suchapalaver/fastas2kmers

A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.

moorembioinfo/KmerAperture

Extract SNPs and accessory differences in closely related bacterial genomes from k-mers

GioStamoulos/Kmers_Dataset_Generation_Regression_Clustering

The generation of a kmers dataset that is associated with multiple gene sequences and the further manipulation of this generated dataset are the main contents of the current project.

kcleal/kmerhash

Convert python string to hashed kmers and back again

adamjorr/kbbq

reference-free base quality score recalibration

gabrielecanesi/DNA-SNP-finder

An algorithm for finding SNPs of a long read compared to a reference genome

Gulshan-gaur/NAUniSeq

NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics

maremita/slm_kgenomvir

Evaluation of Statistical Linear Models for Genome Virus Classification

polyglotDataNerd/poly-spark-kmers

Selvalakshmi27/Kspectra

Generate K-mer spectra to observe modalities of distributions

victoria-r/BioPython

A collection of various biopython scripts.

andriusbern/afp

Alignment-Free phylogenetic tree construction from .fasta sequence files

bissim/bgp-d2

This is our implementation for D2 distance algorithm for k-mers.

bitlab-tech/sequence_analysis_security-study

Security & performance assessment on client-server schemes that perform genomic sequence analysis using homomorphic encryption

Louis-MG/META-DIFF

This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.

maremita/CASTOR_KRFE_v1.0

[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE

panthijeeban/Python-Assignment

Python assignment for my Bio-535 course at URI, Spring 2018.

rupeshsure/DNA-Sequence-Classification-Project

DNA CLASSIFICATION

urniaz/HeatMap4kmeRs

Visualization package for kmeRs similarity score matrix

jermp/fulgor-benchmarks

Benchmarks and evaluation scripts for the Fulgor index.

kalyaniasthana/FindingHiddenMessagesInDNA_BioinformaticsI

Coding problems from course 1 of the Bioinformatics specialization