suchapalaver/krust

Issues

• implement map reduce

  #43 opened 10 months ago by mjbroerman
  1

• Stdin input

  #35 opened a year ago by suchapalaver
  0

• WebAssembly

  #33 opened 2 years ago by suchapalaver
  0

• It would be nice to have a better error message when you call it from command-line with wrong arguments

  #5 opened 2 years ago by suchapalaver
  0

• needletail other then bio to accelerate fasta parsing

  #15 opened 2 years ago by jianshu93
  3

• Explore using the bytes crate

  #20 opened 2 years ago by suchapalaver
  1

• Try moving `from_utf8` conversion to parallel stage - maybe by chaining another `map`

  #13 opened 2 years ago by suchapalaver
  0

• Try using find to look for `b’N’

  #12 opened 2 years ago by suchapalaver
  1

• Try using a struct to construct kmers

  #11 opened 2 years ago by suchapalaver
  0

• look at jellyfish again

  #8 opened 3 years ago by suchapalaver
  0

• Try using rustfmt to standardise your code style

  #4 opened 3 years ago by suchapalaver
  0

• avoid panicking at all in your library code

  #3 opened 3 years ago by suchapalaver
  0

• speed up by changing the utf8 processing, reverse-comp, and storage

  #10 opened 3 years ago by suchapalaver
  0

• speed up using hashmaps

  #9 opened 3 years ago by suchapalaver
  0

• checkout sourmash

  #7 opened 3 years ago by suchapalaver
  0

• change the Config struct member kmer_len to be a usize

  #1 opened 3 years ago by suchapalaver
  0

• build kmer indexes

  #6 opened 3 years ago by suchapalaver
  0

• You don't need to use extern crate

  #2 opened 3 years ago by suchapalaver
  0