OndrejSladky/kmercamel
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
C++MIT
Issues
- 3
- 0
The program cannot read from stdin
#43 opened by karel-brinda - 3
Add general support for parsing .gz files
#44 opened by karel-brinda - 5
output of mask optimization is not FASTA
#65 opened by PavelVesely - 3
- 2
- 0
Add support for larger k-mers
#51 opened by OndrejSladky - 1
Put unittests into a separate folder
#54 opened by OndrejSladky - 0
Use khash in parser
#52 opened by OndrejSladky - 0
Use khash in local
#53 opened by OndrejSladky - 0
convert_superstring.py
#47 opened by karel-brinda - 1
Versioning
#45 opened by karel-brinda - 7
Suboptimal C++ string handling degrades the performance of Ahomaton-based algs
#35 opened by karel-brinda - 1
The example in the program info doesn't work
#42 opened by karel-brinda - 3
Reading FASTA in Python
#17 opened by karel-brinda - 1
Use kseq for parsing FASTA
#16 opened by GordonHoklinder - 7
- 2
- 1
- 0
gtest.h is missing from the repo
#22 opened by karel-brinda - 1
- 6
Testing should be included in the make file
#15 opened by karel-brinda - 0
- 0
Add the "pragma once" directive to header files to avoid multiple inclusions by C++ preprocessor
#20 opened by karel-brinda - 0
Files that are included using C/C++ preprocessor should have the `.h` suffixes
#14 opened by karel-brinda - 1
- 0
- 5
The results don't seem to be correct
#3 opened by karel-brinda - 0
- 1