Pinned Repositories
awesome-bayes
List of resources for bayesian inference
chainlearn
Mini module with syntax sugar for pandas/sklearn
colab_biowrappers
Bio and chem tools wrapped in colabs
gett
Genotype, expression, and trait toolset
gexpfoundation_hackathon
Code repository for our submission at BioxML hackathon, team LLM
hyperparameter.space
Personal blog
molxspec
ML models to convert molecules to ESI mass spectra and maybe back again
scimitar
Single Cell Inference of MorphIng Trajectories and their Associated Regulation (SCIMITAR)
simppl
A simple probabilistic programming language
stardocker
Docker container for a Starcluster launcher that can be easily configured to run docker applications
dimenwarper's Repositories
dimenwarper/awesome-bayes
List of resources for bayesian inference
dimenwarper/chainlearn
Mini module with syntax sugar for pandas/sklearn
dimenwarper/molxspec
ML models to convert molecules to ESI mass spectra and maybe back again
dimenwarper/simppl
A simple probabilistic programming language
dimenwarper/scimitar
Single Cell Inference of MorphIng Trajectories and their Associated Regulation (SCIMITAR)
dimenwarper/colab_biowrappers
Bio and chem tools wrapped in colabs
dimenwarper/gett
Genotype, expression, and trait toolset
dimenwarper/gexpfoundation_hackathon
Code repository for our submission at BioxML hackathon, team LLM
dimenwarper/hyperparameter.space
Personal blog
dimenwarper/awesome-small-molecule-ml
dimenwarper/combat.py
python / numpy / pandas / patsy version of ComBat for removing batch effects.
dimenwarper/genoracle
A simple python module for gene set annotation, enrichment testing, consultation of gene/pathway databases and ontologies.
dimenwarper/pyroconductor
A high-level interface to access commonly-used R tools from python using the low-level r2py
dimenwarper/ashley_scripts
dimenwarper/bcbb
Incubator for useful bioinformatics code, primarily in Python and R
dimenwarper/blk
unicode blocks can plot anything!!
dimenwarper/datacleaner
A Python tool that automatically cleans data sets and readies them for analysis.
dimenwarper/drug_sensitivity_RelNets
Drug sensitivity prediction with lots of gene/drug/cell line interaction information.
dimenwarper/embodi
Framework for large language model "embodiment", e.g. props some "sensors" and "actuators" on the LLM
dimenwarper/fancyimpute
Multivariate imputation and matrix completion algorithms implemented in Python
dimenwarper/llm-for-clinical-variants
dimenwarper/node2vec
dimenwarper/ouija
Incorporating prior knowledge in single-cell trajectory learning using Bayesian nonlinear factor analysis
dimenwarper/pandio
Access python pandas in an "awk-like" manner in the command line -- inspired by Rio
dimenwarper/parsegeo
Python utilities to parse data from the gene expression omnibus
dimenwarper/plsrecord
Lightweight data provenance record keeper
dimenwarper/pytorch-openai-transformer-lm
A PyTorch implementation of OpenAI's finetuned transformer language model with a script to import the weights pre-trained by OpenAI
dimenwarper/scikit-tensor
Python library for multilinear algebra and tensor factorizations
dimenwarper/scsuite
single-cell Scalable Unified Inference of Trajectory Ensembles
dimenwarper/til-about-jobs
Discrete hints, thoughs on job searches (focused on academia and biotech field because that's what I know)