Pinned Repositories
aspirin_analysis
Aspirin Data Analysis on RoR
autoformat_MS
autoformat_oxymax
generate average parameter tables for oxymax results
Bioinformatics_Algorithms_in_Python
characteristic_direction
apply CD, a geometrical approach to identify differentially expressed genes
collos
CollOS : Collection Of Samples - a lightweight sample tracking system
GEOdatasets_analysis
R source for parsing GEO_family.soft files (using GEOquery lib) and creating a custom csv table. Run R source by command line (without having to get in R environment) by passing through arguments.
mascot-csv-filters
find the common peptides through different experiments, filtered by various criteria and scoring the results
mascot-dat
A parser for Mascot DAT files
Zfish-Project
fishing novel gene models and unexplained peptides from alternative splicing
dimitras's Repositories
dimitras/aspirin_analysis
Aspirin Data Analysis on RoR
dimitras/Zfish-Project
fishing novel gene models and unexplained peptides from alternative splicing
dimitras/autoformat_MS
dimitras/autoformat_oxymax
generate average parameter tables for oxymax results
dimitras/Bioinformatics_Algorithms_in_Python
dimitras/characteristic_direction
apply CD, a geometrical approach to identify differentially expressed genes
dimitras/collos
CollOS : Collection Of Samples - a lightweight sample tracking system
dimitras/CommonPeptidesOrProteins
Find common peptides and proteins under defined conditions, like modification, score and so on.
dimitras/coursera_bio_algorithms_part_1
The programming assignments for Coursera course "Bioinformatics Algorithms (Part 1)"
dimitras/DifferentialExpression
dimitras/FindTopTransitions
Find top peaks per peptide match in MS data.
dimitras/heatmaps_w.dendrograms
ggplot2, geom_tile, geom_segment
dimitras/histograms-in-R
dimitras/hotelling
Apply hotelling statistic to compare two groups each of which is multi-dimensional
dimitras/map_identified_peptides_human_fraction3
map the mascot-identified peptides for human fraction3
dimitras/mascot_significant_peps_mouse_phospho
get the mascot significant peptides (with and without modification) from mouse phospho
dimitras/Mouse_AAgenes
dimitras/MS-graphing
dimitras/Peptide_Profiling
Combine peptide lists from different replicates to one. Get a summary profiling of peptide existence across replicates.
dimitras/phospho_spectral_counts_among_conditions
dimitras/plot.norm.factors
dimitras/Plot_expression_data
dimitras/ProteinsToGenes
Get the genes of MS data to run GO enrichment analysis
dimitras/redcap_import
dimitras/scatterplots-clustering-in-R
dimitras/scatterplots_for_ranks_compare
dimitras/tabletools
Miscellaneous scripts for manipulating table files
dimitras/time_series_analysis
dimitras/trending_analysis
dimitras/Zfish_KD_RNA_profiling
it is the sequence of zfish_annotation, with 2 more samples