ITMAT Applications

Pinned Repositories

BEERS2
Language:Python8 10 31
beers_simulator
Language:Perl5 5 12
bio-cookbooks
A Chef cookbooks repository for bioinformatics tools
Language:Ruby8 2 00
CAMPAREE
Configurable And Modular Program Allowing RNA Expression Emulation
Language:Python6 10 51
nitecap
Nitecap is an exploratory circadian data analysis tool aimed at high-throughput omics data. It provides a web-interface to examine your dataset with highly-responsive visualizations, allowing the easy viewing of hundreds or thousands of genes or other features. Nitecap computes some standard rhythmicity tests for you, including JTK, ARSER, Lomb-Scargle, Cosinor, and several tests to compare differential rhythmicity across two conditions (such as phase differences).
Language:HTML3 9 01
Normalization
RNA-Seq normalization and quantification pipeline
Language:Roff10 19 435
pennpipeline
UPENN Proteomics Analysis Pipeline
Language:Ruby4 4 01
pgfi-hts
PGFI High Throughput Sequence Center Repo
2 1 00
rum
RNA-Seq Unified Mapper
Language:Roff26 19 1894
VODKA
Language:Perl3 4 02

ITMAT Applications's Repositories

itmat/rum
RNA-Seq Unified Mapper
Language:Roff26 19 1894
itmat/Normalization
RNA-Seq normalization and quantification pipeline
Language:Roff10 19 435
itmat/BEERS2
Language:Python8 10 31
itmat/bio-cookbooks
A Chef cookbooks repository for bioinformatics tools
Language:Ruby8 2 00
itmat/CAMPAREE
Configurable And Modular Program Allowing RNA Expression Emulation
Language:Python6 10 51
itmat/beers_simulator
Language:Perl5 5 12
itmat/nitecap
Nitecap is an exploratory circadian data analysis tool aimed at high-throughput omics data. It provides a web-interface to examine your dataset with highly-responsive visualizations, allowing the easy viewing of hundreds or thousands of genes or other features. Nitecap computes some standard rhythmicity tests for you, including JTK, ARSER, Lomb-Scargle, Cosinor, and several tests to compare differential rhythmicity across two conditions (such as phase differences).
Language:HTML3 9 01
itmat/VODKA
Language:Perl3 4 02
itmat/chef-cookbooks
Chef cookbooks for various services not directly related to bioinformatics, but are related to it
Language:Ruby2 1 0
itmat/hogenesch-lab-website
Hogenesch Lab Website
Language:PHP2 2 01
itmat/pade
Patterns from Gene Expression
Language:Python2 12 103
itmat/pgfi-hts
PGFI High Throughput Sequence Center Repo
2 1 00
itmat/aspirin_analysis
Aspirin Data Analysis on RoR
Language:Ruby1 2 0
itmat/chronobiome
Adding additional datasets to Amy's chronobiome analyses
Language:R1 5 0
itmat/ITMAT_office_houRs
1 5 00
itmat/OmicsBenchmarkReport
Report template for omics methods benchmarking
1 7 0
itmat/qips-extras
collection of scripts or executables that fit into the qips framework
Language:Ruby1 1 0
itmat/BEERS_UTILS
Utilities for the BEERS 2 suite of tools.
Language:Python0 10 00
itmat/bp2
Language:PHP0 5 00
itmat/AnovaSplice
11 0
itmat/Barrel
Language:Python6 0
itmat/biopy-isatab
Python parser for ISAtab, a biological file format for experimental metadata
Language:Python1 0
itmat/bp1
Language:PHP5 0
itmat/collos
CollOS : Collection Of Samples - a lightweight biobanking tool
Language:Ruby11 01
itmat/DECAF
Language:Perl4 0
itmat/DRINC
Duplication Rate Identifier for NGS Cleanup
Language:Python6 0
itmat/isareport
ISA-Report: Makes nice looking HTML reports from ISA-TAB annotated experiments
Language:Python2 0
itmat/isatab-templates
ISATAB XML templates for use in ISACreator
12 0
itmat/itmat_archive
Simple Rails application to archive the metadata of old experiments (which are on a bunch of disks)
Language:Ruby11 0
itmat/pre-pade
Pre-PADE
Language:C12 4