Duplication Rate Identifier for NGS Cleanup.
Usage: python DRINK5Cluster.py [filtering mode] [output sam file w/ tags]
For the stranded info,
- enter 0 for a nonstranded experiment.
- enter 1 for a stranded experiment.
The radius is the max possible distance between two optical duplicates.
- If you set this too high you might call legitimate dups as optical dups.
- If you set it too low you might miss optical dups.
The filtering mode is optional.
- Enter 0 for just outputing new sam with tags, without filtering.
- Enter 1 for filtering all dups.
- Enter 2 for filtering optical dups only.
The output sam file w/ tags field is to be specified if and only if the filtering mode is specified.