Pinned Repositories
3D-CycleGan-Pytorch-MedImaging
Pytorch pipeline for 3D image domain translation using Cycle-Generative-Adversarial-networks, without paired examples.
3d-pix2pix-CycleGAN
baselines
OpenAI Baselines: high-quality implementations of reinforcement learning algorithms
BasicSR
Open Source Image and Video Restoration Toolbox for Super-resolution, Denoise, Deblurring, etc. Currently, it includes EDSR, RCAN, SRResNet, SRGAN, ESRGAN, EDVR, etc. Also support StyleGAN2, DFDNet.
bidscoin
BIDScoin converts your source-level neuroimaging data to BIDS
hodaie-teem
Fork of TEEM library for the Hodaie Lab
project_template
Project folder template for my projects.
randomised_filtering
Code for randomised tractogram filtering using rSIFT
sagit
tracto_vis
djoerch's Repositories
djoerch/hodaie-teem
Fork of TEEM library for the Hodaie Lab
djoerch/randomised_filtering
Code for randomised tractogram filtering using rSIFT
djoerch/sagit
djoerch/tracto_vis
djoerch/3D-CycleGan-Pytorch-MedImaging
Pytorch pipeline for 3D image domain translation using Cycle-Generative-Adversarial-networks, without paired examples.
djoerch/3d-pix2pix-CycleGAN
djoerch/baselines
OpenAI Baselines: high-quality implementations of reinforcement learning algorithms
djoerch/BasicSR
Open Source Image and Video Restoration Toolbox for Super-resolution, Denoise, Deblurring, etc. Currently, it includes EDSR, RCAN, SRResNet, SRGAN, ESRGAN, EDVR, etc. Also support StyleGAN2, DFDNet.
djoerch/bidscoin
BIDScoin converts your source-level neuroimaging data to BIDS
djoerch/CNTSeg
djoerch/project_template
Project folder template for my projects.
djoerch/bidsconv
Command-line tool to convert multi-subject raw dicoms to a full BIDS formatted dataset
djoerch/codeare
Common data exchange and reconstruction engine for MRI
djoerch/contrastive-unpaired-translation
Contrastive unpaired image-to-image translation, faster and lighter training than cyclegan (ECCV 2020, in PyTorch)
djoerch/datalad
Keep code, data, containers under control with git and git-annex
djoerch/deepsphere-pytorch
DeepSphere: a graph-based spherical CNN (PyTorch)
djoerch/djoerch.github.io
djoerch/docker-pytorch
A Docker image for PyTorch
djoerch/freesurfer_bids_app
recon-all from FreeSurfer
djoerch/mne-bids
MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.
djoerch/mne-bids-pipeline
Automatically process entire electrophysiological datasets using MNE-Python.
djoerch/moab_taskman
Task manager for handling many long running machine learning experiments
djoerch/neurocontainers
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
djoerch/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
djoerch/nipype
Workflows and interfaces for neuroimaging packages
djoerch/pytorch-ssim-3D
pytorch structural similarity (SSIM) loss for 3D images
djoerch/scilpy
The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
djoerch/SegSRGAN
djoerch/tractoflow
TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
djoerch/TractSegWithLabelEmbedding