Pinned Repositories
2023-June-Introduction-to-R-for-Bioinformatics
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
abritamr
A pipeline for running AMRfinderPlus and collating results into functional classes
API_Hackathon
ApiBuilding
ApiRandom
ARGprofiler
A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
atlas
ATLAS - Three commands to start analyzing your metagenome data
ilri-africa-cdc-training
A suite of pathogen genomics tutorials for the ILRI Genomics platform training programs
plp
This repository is created to facilitate my learning process in the PLP software development journey
plp-portfolio
dkomics's Repositories
dkomics/gitworkshop
A repository for GitHub class
dkomics/ilri-africa-cdc-training
A suite of pathogen genomics tutorials for the ILRI Genomics platform training programs
dkomics/API_Hackathon
dkomics/ApiBuilding
dkomics/ApiRandom
dkomics/ARGprofiler
A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets
dkomics/carbon
:black_heart: Create and share beautiful images of your source code
dkomics/cgeisolate
CGE isolate pipeline
dkomics/dorado
A LibTorch Basecaller for Oxford Nanopore Reads
dkomics/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
dkomics/MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
dkomics/plp
This repository is created to facilitate my learning process in the PLP software development journey
dkomics/plp-portfolio
dkomics/TBProfiler
Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
dkomics/dart
dkomics/DART-HACKATHON-REPOSITORY
dkomics/Feb-2024-PythonHack2
dkomics/Feb_2024-Python-Hackathon1
dkomics/kilifi_bioinfo_meta
dkomics/Kleborate
dkomics/labridge
A Django project
dkomics/learning-javascript
learning part of plp
dkomics/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
dkomics/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
dkomics/nextflow
A DSL for data-driven computational pipelines
dkomics/PollswithDjango
dkomics/qc_nextflow
dkomics/SQL-Database
dkomics/taxprofiler
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
dkomics/write-the
AI-powered Documentation and Test Generation Tool