dmichalak

dmichalak's Stars

• ml-struct-bio/cryodrgn

  Neural networks for cryo-EM reconstruction

  Language:Python31076

• RBVI/ChimeraX

  Source code for molecular graphics program UCSF ChimeraX

  Language:Python14729

• geoffwoollard/learn_cryoem_math

  Language:Jupyter Notebook11827

• EuanPyle/relion2dynamo

  Simple package to convert star files to Dynamo tables.

  Language:Python31

• pemsley/coot

  Software for macromolecular model-building

  Language:C++12145

• MPI-Dortmund/tomotwin-cryoet

  cryo-ET particle picking by representation and metric learning

  Language:Python305

• brisvag/blik

  Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.

  Language:Python238

• scipion-em/scipion-em-tomo

  Base tomography Scipion plugin with data model definition

  Language:Python84

• 3dem/model-angelo

  Automatic atomic model building program for cryo-EM maps

  Language:Python11618

• teamtomo/mdocfile

  SerialEM mdoc files as pandas dataframes

  Language:Roff97

• teamtomo/yet-another-imod-wrapper

  Simple API for automated tilt-series alignment in IMOD

  Language:Python62

• alisterburt/napari-mrcfile-reader

  Read MRC format image files into napari using the mrcfile package from CCP-EM

  Language:Python185

• napari/napari-animation

  A napari plugin for making animations

  Language:Python7627

• alisterburt/eulerangles

  simplify the handling of large sets of Euler angles in Python

  Language:Python325

• teamtomo/imodmodel

  IMOD model files as pandas dataframes in Python

  Language:Python86

• teamtomo/starfile

  STAR file I/O in Python

  Language:Python4418

• teamtomo/dynamotable

  Dynamo table files in Python as pandas dataframes

  Language:Python41

• napari/napari

  napari: a fast, interactive, multi-dimensional image viewer for python

  Language:Python2.2k421

• teamtomo/teamtomo-site-archive

  A collaborative knowledge sharing platform for the cryo-ET community

  Language:MATLAB2013

• alisterburt/warp2isonet

  prepare ISONET training data from a warp project directory

  Language:Python3

• FrangakisLab/ArtiaX

  ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.

  Language:Python313

• IsoNet-cryoET/IsoNet

  Self-supervised learning for isotropic cryoET reconstruction

  Language:Python6713

• alisterburt/dynamo2m

  a bidirectional interface between Dynamo and the Warp-RELION-M pipeline

  Language:Python155

• wan-lab-vanderbilt/STOPGAP

  STOPGAP is a MATLAB-based package for subtomogram averaging.

  Language:MATLAB296

• 3dem/relion

  Image-processing software for cryo-electron microscopy

  Language:C++445200

• junegunn/vim-plug

  :hibiscus: Minimalist Vim Plugin Manager

  Language:Vim Script34k1.9k

• Optixal/neovim-init.vim

  :izakaya_lantern: A hybrid Neovim configuration for productive developers who want a functional yet aesthetic Vim experience :izakaya_lantern:

  Language:Lua1k202

• alpertuna/vim-header

  Easily adds brief author info and license headers

  Language:Vim Script13976