Pinned Repositories
Anisotropy
These are programs that deal with anisotropy (both resolution and sampling)
ArtiaX
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
autoalign_dynamo
automated on-the-fly tilt-series alignment
basic-latex
A decent, simple LaTeX template
blik
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
cryohub
IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.
DeePiCt
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
fidder
Detect and erase gold fiducials in cryo-EM images
napari
napari: a fast, interactive, multi-dimensional image viewer for python
relion2dynamo
Simple package to convert star files to Dynamo tables.
dmichalak's Repositories
dmichalak/Anisotropy
These are programs that deal with anisotropy (both resolution and sampling)
dmichalak/ArtiaX
ArtiaX is an open-source extension of the molecular visualisation program ChimeraX.
dmichalak/autoalign_dynamo
automated on-the-fly tilt-series alignment
dmichalak/basic-latex
A decent, simple LaTeX template
dmichalak/blik
Python tool for visualising and interacting with cryo-ET and subtomogram averaging data.
dmichalak/cryohub
IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data.
dmichalak/DeePiCt
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
dmichalak/fidder
Detect and erase gold fiducials in cryo-EM images
dmichalak/napari
napari: a fast, interactive, multi-dimensional image viewer for python
dmichalak/relion2dynamo
Simple package to convert star files to Dynamo tables.
dmichalak/teamtomo.github.io
A collaborative knowledge sharing platform for the cryo-ET community
dmichalak/sta-pipeline
dmichalak/TomoNet
TomoNet is a GUI based pipeline package focusing on cryoET and STA data processing