dmnfarrell
Research Fellow UCD Veterinary School ORCID ID: 0000-0003-3020-7945
University College DublinDublin, Ireland
Pinned Repositories
epitopemap
A web application for visualizing MHC binding predictions
epitopepredict
Python package and command line tool for epitope prediction
pandastable
Table analysis in Tkinter using pandas DataFrames.
pathogenie
Desktop tool for microbial genome annotation and gene detection
pybioviz
bioinformatics visualization tools with pyviz/bokeh
smallrnaseq
small rna-seq analysis package
snipgenie
command line and desktop tool for microbial variant calling
tablexplore
Table analysis and plotting application written in PySide2/PyQt5
teaching
scripts and notes for learning
tkintertable
A pure Python library for adding tables to a Tkinter application
dmnfarrell's Repositories
dmnfarrell/pandastable
Table analysis in Tkinter using pandas DataFrames.
dmnfarrell/tkintertable
A pure Python library for adding tables to a Tkinter application
dmnfarrell/tablexplore
Table analysis and plotting application written in PySide2/PyQt5
dmnfarrell/epitopepredict
Python package and command line tool for epitope prediction
dmnfarrell/teaching
scripts and notes for learning
dmnfarrell/smallrnaseq
small rna-seq analysis package
dmnfarrell/pybioviz
bioinformatics visualization tools with pyviz/bokeh
dmnfarrell/pathogenie
Desktop tool for microbial genome annotation and gene detection
dmnfarrell/snipgenie
command line and desktop tool for microbial variant calling
dmnfarrell/epitopemap
A web application for visualizing MHC binding predictions
dmnfarrell/dmnfarrell.github.io
my pages
dmnfarrell/learnct
Java CT Simulation
dmnfarrell/mtbc_analyses
Code for genomics analysis of MTBC locii.
dmnfarrell/mtbdiff
Characterization of Mycobacterium tuberculosis complex species using mummer and nucdiff
dmnfarrell/peat
PEAT is a suite of programs for capturing, analyzing and predicting biophysical characteristics of proteins
dmnfarrell/batchfilerename
Batch file renaming utility written in Python
dmnfarrell/binderapps
bokeh binder apps
dmnfarrell/btbabm
Agent based model for bovine TB spread in herds
dmnfarrell/gordon-group
scripts and data for gordon group papers
dmnfarrell/tracebtb
M.bovis WGS surveillance tool.
dmnfarrell/amr-project
notebooks and code for AMR gene detection and other tools
dmnfarrell/digitalart
digital art stuff
dmnfarrell/nanopore-project
scripts/notes for bacterial nanopore sequencing
dmnfarrell/podcast-example
Example jekyll podcast site
dmnfarrell/zimgeo
zimbabwe gis