dmnfarrell/mtbc_analyses

Code for genomics analysis of MTBC locii.

Notebooks and data for genomic MTBC analyses

RD900

• https://www.ncbi.nlm.nih.gov/gene/1090581
• https://www.uniprot.org/uniprot/Q7U095

TBD1

• https://www.nature.com/articles/s41467-020-14508-5
• https://www.ncbi.nlm.nih.gov/nuccore/FR878060.1?report=graph

Useful files

• genomes_data.csv - table of links to raw read data for selected MTBC species with some meta data
• tools.py - various functions used in some of the notebooks in this repo
• mtb_assemblies.csv - table of known assemblies