dnanexus/dx-toolkit

Issues

• dx-toolkit installation in Linux HPC

  #1319 opened 3 months ago by frahimov
  1

• How to properly write paths with the CLI

  #1305 opened 3 months ago by jaumereig
  3

• Unable to access .jar file in resources

  #1217 opened 3 months ago by scienception
  1

• feature request: range-request for `dx data download`

  #1346 opened 3 months ago by lindenb
  1

• Version "0.377.0" is not available on PyPI

  #1376 opened 3 months ago by giang-nghg
  1

• folder size when using dx ls

  #1281 opened 6 months ago by wilmerwang
  2

• Getting error after installation

  #1313 opened 9 months ago by MaryGoAround
  2

• SSL error while using dx upload

  #1349 opened 9 months ago by wayne-w-cloud
  0

• dx-jobutil-add-output having trouble when called in parallel

  #1331 opened 10 months ago by bomquangia
  0

• dxpy.exceptions.PermissionDenied: User is trying to make a non-provider project and bill it to a provider wallet., code 401.

  #1318 opened 10 months ago by HackerLZH
  0

• Make dxpy work with python 3.12

  #1287 opened a year ago by ThomasHickman
  0

• dx client on Windows fails to open cloud workstation with ssh - system can't file the file specified

  #1292 opened a year ago by ilivyatan
  1

• env: Python 2.7: no such file or directory

  #1220 opened a year ago by kris10wing
  5

• DXFile used in applet is not working for watermarked files

  #1212 opened a year ago by PaulWebbster
  0

• New feature -- zcat

  #1195 opened a year ago by oleraj
  0

• dx run fails when using batch-tsv file

  #1168 opened a year ago by aledj2
  1

• feature request - add --dry-run arg to dx run

  #1066 opened 2 years ago by aledj2
  0

• SSL error

  #1031 opened 2 years ago by jerome-f
  0

• Loosen dependency requirements for dxpy package

  #941 opened 2 years ago by katiesandford
  6

• SyntaxError: invalid escape sequence \/ when running pytest -W error

  #1028 opened 2 years ago by dmitrii
  0

• KeyError while searching for failed jobs

  #787 opened 3 years ago by lemieuxl
  1

• dx find jobs: KeyError: 'stoppedRunning'

  #809 opened 2 years ago by lfearnley
  1

• Update to a more recent nextflow version

  #1009 opened 2 years ago by RachelDuffin
  2

• Update to a more recent nextflow version

  #1008 opened 2 years ago by RachelDuffin
  1

• dx-verify-file dependancy issue

  #1002 opened 2 years ago by aledj2
  0

• dxpy pins vulnerable cryptography

  #949 opened 2 years ago by Ben-Habermeyer
  7

• dx.api.project_archive failed to call due to non-closed files

  #940 opened 2 years ago by JasonLing95
  1

• Installation instructions inadequate/don't work for docker deployment

  #921 opened 2 years ago by MattBrauer
  1

• `dxpy.api.job_get_log` returns 405 error

  #895 opened 2 years ago by leeleavitt
  1

• dx download failed with Python 3.11

  #896 opened 2 years ago by ptdtan
  1

• Error while retrieving session configuration: AttributeError: 'NoneType' object has no attribute 'pid' when running on Docker

  #850 opened 2 years ago by JasonLing95
  0

• urllib3.exceptions.ReadTimeoutError on dx run

  #857 opened 2 years ago by 23andme-jaredo
  1

• dxpy.exceptions.DXCLIError: Value provided for input field "in" could not be parsed as file:

  #802 opened 2 years ago by monika3010
  2

• `/usr/bin/env: ‘python2.7’: No such file or directory`

  #788 opened 2 years ago by bschilder
  2

• API break in get_dxlink_ids()

  #772 opened 2 years ago by Ben-Habermeyer
  2

• Archived file downloaded with size 0

  #783 opened 3 years ago by Aisha-D
  0

• DNAnexus watch command to not refresh its output for use in CI services

  #712 opened 3 years ago by clintval
  4

• dx-app-wizard crashes with --json-file that lacks "optional" key

  #761 opened 3 years ago by kyclark
  1

• dx: error: unrecognized arguments: running swiss army knife plink2

  #764 opened 3 years ago by zillurbmb51
  1

• Newest urllib3 breaks dxpy

  #746 opened 3 years ago by jtratner
  2

• DXDataObject describe with field properties return error

  #735 opened 3 years ago by JasonLing95
  1

• Can't install Upload Agent on MacOS Big Sur

  #718 opened 3 years ago by ConnorBarnhill
  0

• dx run fails when record-id doesn't exist

  #715 opened 3 years ago by PetratDNA
  0

• The cloud workstation app defaults to Ubuntu 16.04

  #681 opened 3 years ago by Graeme-Smith
  1

• dx download/upload fails on FIPS enabled systems

  #702 opened 3 years ago by anastasia-lucas
  3

• Add archival API to CLI commands

  #692 opened 3 years ago by jtratner
  0

• dx upload fails on large (~100MB) files

  #710 opened 3 years ago by dcaldhr
  2

• Upload Agent fails to start on macOS Big Sur

  #711 opened 3 years ago by dcaldhr
  0

• websocket error in method DXJobLogStreamClient.opened

  #705 opened 3 years ago by bolton-lab
  2

• get_download_url should never raise SystemExit

  #698 opened 3 years ago by jtratner
  0