Pinned Repositories
BWM
This repository contains code from the following publication: Jou JD, Jain S, Georgiev I, Donald BR. BWM*: A novel, provable ensemble- based dynamic programming algorithm for sparse approximations of computational protein design. J Comput Biol. 2016. For the latest version of OSPREY, please try http://www.cs.duke.edu/donaldlab/osprey.php instead.
jpype-py2
A Python-Java bridge focusing on stability for Python 2.7
libprotnmr
OSPREY2
Open Source Protein REdesign for You
OSPREY3
Open Source Protein REdesign for You v3
OSPREY_3_paper
Paper about OSPREY 3
OSPREY_SparseAStar
This repository contains code used in the following publication: Jain S, Jou JD, Georgiev IS, and Donald BR. A Critical Analysis of Computational Protein Design with Sparse Residue Interaction Graphs. PLoS Comp Biol. 2017, In press. For the latest version of OSPREY, please try http://www.cs.duke.edu/donaldlab/osprey.php instead.
protein-interaction-viewer
Show probe contact dots within PyMol
ProteinDesignPlugin
TPIE-Java
glue code to use TPIE in Java projects
donaldlab's Repositories
donaldlab/OSPREY3
Open Source Protein REdesign for You v3
donaldlab/protein-interaction-viewer
Show probe contact dots within PyMol
donaldlab/ProteinDesignPlugin
donaldlab/OSPREY2
Open Source Protein REdesign for You
donaldlab/BWM
This repository contains code from the following publication: Jou JD, Jain S, Georgiev I, Donald BR. BWM*: A novel, provable ensemble- based dynamic programming algorithm for sparse approximations of computational protein design. J Comput Biol. 2016. For the latest version of OSPREY, please try http://www.cs.duke.edu/donaldlab/osprey.php instead.
donaldlab/jpype-py2
A Python-Java bridge focusing on stability for Python 2.7
donaldlab/libprotnmr
donaldlab/OSPREY_3_paper
Paper about OSPREY 3
donaldlab/OSPREY_SparseAStar
This repository contains code used in the following publication: Jain S, Jou JD, Georgiev IS, and Donald BR. A Critical Analysis of Computational Protein Design with Sparse Residue Interaction Graphs. PLoS Comp Biol. 2017, In press. For the latest version of OSPREY, please try http://www.cs.duke.edu/donaldlab/osprey.php instead.
donaldlab/TPIE-Java
glue code to use TPIE in Java projects
donaldlab/markstar_benchmarks
donaldlab/cdio
donaldlab/molscope
A flexible and attractive molecular viewer for JVM applications.
donaldlab/osprey-gui
A cross-platform GUI for OSPREY 3
donaldlab/osprey-service
A web service to support the Osprey GUI
donaldlab/resistor
Computational Resistance Mutation Prediction using K*, mutational signatures, and Pareto optimization