donaldlab/OSPREY3

Issues

• point mutation effect on protein-small molecule

  #197 opened 9 months ago by biotech70
  0

• Asking about a specific Osprey behaviour

  #194 opened a year ago by Titorat
  0

• Documentation is not working for me

  #193 opened a year ago by Titorat
  0

• Is there a way to add non-natural amino acids to OSPREY?

  #192 opened a year ago by amin-sagar
  0

• Example Scripts for fries/EWAK*

  #191 opened a year ago by amin-sagar
  4

• Unexpected Results with kstar.py

  #189 opened 2 years ago by amin-sagar
  4

• NativeConfEnergyCalculator errors on "bad" confspaces

  #190 opened 2 years ago by gusennan
  1

• Bug: SequenceAnalyzer doesn't work because confdb deleted

  #188 opened 2 years ago by gusennan
  0

• CLOSED: issue running osprey from source

  #187 opened 2 years ago by ONikeH
  1

• Java package 'edu.duke.cs.osprey' has no attribute 'confspace' when compiling from source

  #182 opened 2 years ago by ONikeH
  1

• Small molecules with bbkstar and ConfSpace/ SimpleConfSpace format conversion

  #186 opened 2 years ago by Patdi
  0

• Error when running prep.py

  #185 opened 2 years ago by Patdi
  1

• GUI crashes when removing a residue from the list of flexible residues

  #184 opened 2 years ago by gusennan
  0

• Use K* for protein in single form

  #181 opened 3 years ago by biotech70
  11

• Get the total energy of the input conformation

  #180 opened 3 years ago by diallobakary4
  8

• TypeError: No matching overloads found for *static* edu.duke.cs.osprey.structure.PDBIO.readFile(edu.duke.cs.osprey.confspace.Strand)

  #179 opened 3 years ago by elvismartis
  1

• turn emat.dat file to human readable

  #178 opened 3 years ago by QUEST2179
  0

• forcefield file missing

  #173 opened 3 years ago by shengzizhang
  1

• Example compiled conf space K* doesn't enumerate confs

  #171 opened 3 years ago by gusennan
  1

• kstar.boundedmem.py compiled conf space example

  #172 opened 3 years ago by gusennan
  0

• work with unusall groups in OSPREY, a complicated issue!

  #170 opened 3 years ago by biotech70
  4

• java error during simultaneous mutation with Kstar

  #168 opened 3 years ago by biotech70
  2

• What is the best option to choose the best mutation in the ewakstar algorithm?

  #167 opened 3 years ago by biotech70
  3

• Res type not allowed message!?

  #166 opened 3 years ago by biotech70
  4

• What is the best way to install OSPREY?

  #165 opened 4 years ago by biotech70
  3

• How to interpret the results of Kstar?

  #164 opened 4 years ago by biotech70
  14

• residue(s) could not be matched to templates

  #163 opened 4 years ago by x811zou
  1

• Do not use all CPU cores

  #162 opened 4 years ago by biotech70
  11

• MARK* Infinite Loop

  #156 opened 4 years ago by gusennan
  1

• Unknown atom types are processed by Osprey silently

  #160 opened 4 years ago by gusennan
  0

• Remove or limit extraneous logging from MARK*

  #159 opened 4 years ago by gusennan
  0

• Silent failure for GPUs with CUDA > 8.0

  #136 opened 4 years ago by prihoda
  4

• Fix build timeouts

  #142 opened 4 years ago by gusennan
  0

• No memory pool named Old Gen

  #135 opened 4 years ago by prihoda
  3

• Issues with confdb

  #143 opened 4 years ago by gusennan
  1

• templateLib

  #153 opened 4 years ago by biotech70
  2

• memory size

  #154 opened 4 years ago by biotech70
  2

• install osprey in windows

  #152 opened 4 years ago by biotech70
  2

• using OSPREY for protein complex or drug design

  #151 opened 4 years ago by AlirezaDoustmohammadi
  2

• Have the confdb detect when the underlying confspace has changed

  #158 opened 4 years ago by gusennan
  0

• Fix documentation generation in build system

  #157 opened 4 years ago by gusennan
  0

• MARK* Infinite Loop

  #155 opened 4 years ago by gusennan
  1

• I get a java exception when try ospray.start()

  #146 opened 4 years ago by onlycparra
  2

• install.sh for osprey

  #149 opened 4 years ago by biotech70
  2

• osprey runing error

  #150 opened 4 years ago by biotech70
  23

• Fix Florian's CATS/PTR issue

  #147 opened 4 years ago by gusennan
  0

• How to add osprey to path?

  #138 opened 4 years ago by AlirezaDoustmohammadi
  6

• Index out of bounds exception thrown in GradientDescentPFunc

  #144 opened 4 years ago by gusennan
  2

• Azure CI not writing build number correctly?

  #137 opened 4 years ago by cuchaz
  4

• Check how Cystines are handled in the ResidueCache

  #140 opened 4 years ago by gusennan
  0