Pinned Repositories
BioPhi
BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.
deepbgc
BGC Detection and Classification Using Deep Learning
3Dmodel_scripts
This repository contains the custom scripts used in the automated workflows hosted on the NIH 3D Print Exchange (3dprint.nih.gov).
AbNumber
Convenience Python APIs for antibody numbering using ANARCI
ANARCI-pyhmmer-fork
Antibody Numbering and Antigen Receptor ClassIfication
antismash
antiSMASH
bgc-pipeline
golem
Open-source chatbot framework for python developers. Batteries included 🔋🔋
usum
USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE
prihoda's Repositories
prihoda/AbNumber
Convenience Python APIs for antibody numbering using ANARCI
prihoda/golem
Open-source chatbot framework for python developers. Batteries included 🔋🔋
prihoda/usum
USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE
prihoda/bgc-pipeline
prihoda/ANARCI-pyhmmer-fork
Antibody Numbering and Antigen Receptor ClassIfication
prihoda/antismash
antiSMASH
prihoda/bgc-pipeline-1
prihoda/conda
Specifying a conda environment with `environment.yml`
prihoda/dvc
Data Science Version Control - Git for data scientists
prihoda/fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
prihoda/hmmlearn
Hidden Markov Models in Python, with scikit-learn like API
prihoda/ImmuneBuilder-fork
Predict the structure of immune receptor proteins
prihoda/jupyterlab
Demonstrating how to get JupyterLab working with Binder
prihoda/Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
prihoda/marshmallow_dataclass
Automatic generation of marshmallow schemas from dataclasses.
prihoda/MaskedProteinEnT-fork
prihoda/miniwdl
A static analysis toolkit for the Workflow Description Language
prihoda/MLPrague2019
prihoda/mongoengine-migrate
Migrations for MongoEngine inspired by Django
prihoda/mRNAid-fork
prihoda/Mutation_Maker
Application for mutagenic primer design. Facilitates development of biocatalysts (Green Chemistry) and new therapeutic proteins.
prihoda/nightingale
Data visualisation web components for the life sciences.
prihoda/osprey-binder
prihoda/pyfaidx
Efficient pythonic random access to fasta subsequences
prihoda/readthedocs.org
The source code that powers readthedocs.org
prihoda/RREFinder
Bioinfromatic application for the detection of RREs in protein sequences of interest
prihoda/shields
Concise, consistent, and legible badges in SVG and raster format
prihoda/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
prihoda/transformers
🤗Transformers: State-of-the-art Natural Language Processing for Pytorch, TensorFlow, and JAX.
prihoda/umap-test