Merck/deepbgc

Issues

• [Question] How can I use precomputed genes via GFF format with DeepBGC?

  #101 opened a month ago by jolespin
  0

• installing deepbgc

  #99 opened 5 months ago by kadesu
  1

• Hmmer and Prodigal Package Access Problem

  #89 opened 2 years ago by plouisross
  1

• DeepBGC failed with ValueError: Grouper for 'sequence_id' not 1-dimensional

  #100 opened 3 months ago by marlaux
  0

• ValueError: End location (8780) must be greater than or equal to start location (9428)

  #98 opened 8 months ago by PKU007
  0

• deepbgc info crash - same as Issue #39

  #97 opened 9 months ago by jfoldi81
  0

• ImportError: Missing required dependencies ['numpy']

  #95 opened 9 months ago by chengyou96
  1

• User Warning

  #96 opened 9 months ago by EmiCA22
  0

• DeepBGC failed with ValueError: missing molecule_type in annotations

  #67 opened 3 years ago by chengyou96
  4

• Missing required dependencies ['numpy'] with any version of deepbgc

  #66 opened 3 years ago by acelik
  1

• Looking for individual genes

  #94 opened a year ago by XT33KAKA
  0

• Use https instead of ftp protocol for Pfam database download

  #93 opened a year ago by jasmezz
  1

• Visualization

  #80 opened 2 years ago by OwenNaicker
  1

• running "deepbgc info" issue

  #91 opened a year ago by AledHe
  0

• Bugs for protein input

  #90 opened 2 years ago by Xinpeng021001
  1

• Installing deepBGC

  #56 opened 3 years ago by planctoqueen
  8

• Could deepBGC be used for special gene clusters?

  #88 opened 2 years ago by Xinpeng021001
  0

• what "inhibitor" means???

  #87 opened 2 years ago by esraagithub
  0

• fit_generator

  #86 opened 2 years ago by wawpaopao
  0

• how to create negative samples?

  #85 opened 2 years ago by wawpaopao
  1

• installation error

  #84 opened 2 years ago by esraagithub
  1

• how to get a cluster?

  #83 opened 2 years ago by wawpaopao
  0

• WARNING: Tensor flow backened message when running deepbgc info into the CLI

  #82 opened 2 years ago by zagonzalez
  1

• run Deepbgc in fungal genomes

  #81 opened 2 years ago by Juliana-Soto24
  1

• bug in get_proteins_by_id affecting pfam annotator

  #78 opened 2 years ago by LuisFF
  4

• Installation Failure

  #75 opened 2 years ago by NiklausChung
  5

• DeepBGC failed with KeyError: pfam_id

  #47 opened 4 years ago by artur-matysik
  6

• Where I can get the code of e-deepBGC?

  #76 opened 2 years ago by liangyong1991
  1

• Error during detector training

  #73 opened 2 years ago by esraagithub
  5

• How to get antismash and deebgc cobined svg?

  #72 opened 3 years ago by MenusGarg
  0

• I am getting an issue regarding memory, how to solve this ?

  #71 opened 3 years ago by devarajarun
  0

• deepbgc pipeline does not seem to use more than 2 cores?

  #65 opened 3 years ago by bkm23644
  2

• deepbgc output result tsv file

  #63 opened 3 years ago by APengs494
  1

• leave-class out validation

  #64 opened 3 years ago by pmobio
  1

• deepbgc download error

  #62 opened 3 years ago by APengs494
  0

• Deepbgc installation through conda

  #61 opened 3 years ago by ebervilla
  5

• gbff GenBank file format is not recognised

  #57 opened 3 years ago by gkapatai
  2

• Automatically re-annotate PFAM domains if they are incompatible

  #58 opened 3 years ago by susheelbhanu
  3

• Fails with deepbgc. ImportError: cannot import name 'ChainMap'

  #55 opened 4 years ago by APengs494
  5

• Installing 0.1.26 with Anaconda

  #54 opened 4 years ago by danudwary
  2

• DeepBGC failed with Exception: Unexpected error detecting protein domains using HMMER hmmscan

  #53 opened 4 years ago by Bollie15
  2

• different number of elements in *.bgc.tsv rows

  #49 opened 4 years ago by artur-matysik
  2

• ERROR: Could not find a version that satisfies the requirement tensorflow<2.0.0,>=1.15.4 (from deepbgc)

  #52 opened 4 years ago by Bollie15
  3

• Problem for training DeepBGC from scratch

  #46 opened 4 years ago by yangziyi1990
  6

• How to use DeepBGC's results to the antiSMASH

  #45 opened 4 years ago by yangziyi1990
  14

• No module named 'sklearn.ensemble.forest'

  #44 opened 4 years ago
  1

• using deepBGC with metagenomes

  #43 opened 4 years ago by drelo
  9

• MD5SUM is not match

  #42 opened 4 years ago by qb-lyu
  3

• Is there other way to download data set?[speed restriction]

  #41 opened 4 years ago by Bollie15
  5

• Test run not working

  #39 opened 4 years ago by ariverosw
  3