synthetic-biology
There are 193 repositories under synthetic-biology topic.
CIDARLAB/cello
Genetic circuit design automation
bebop/poly
A Go package for engineering organisms.
Edinburgh-Genome-Foundry/DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
Lattice-Automation/seqviz
a JavaScript DNA, RNA, and protein sequence viewer
Edinburgh-Genome-Foundry/DnaChisel
:pencil2: A versatile DNA sequence optimizer
Merck/deepbgc
BGC Detection and Classification Using Deep Learning
Adibvafa/CodonTransformer
CodonTransformer: The ultimate tool for codon optimization, optimizing DNA sequences for heterologous protein expression across 164 species.
BasedLabs/NoLabs
Open source biolab
ChristophReich1996/Cell-DETR
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
20n/act
Computational synthetic biology: Predicting DNA edits for bioengineering
seek4science/seek
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
TimothyStiles/how-to-synbio
The resources I always recommend to new synthetic biologists.
SynBioHub/synbiohub
Web application enabling users and software to browse, upload, and share synthetic biology designs
CIDARLAB/Cello-v2
Cello v2 is the continuation of the Cello genetic circuit design software.
Edinburgh-Genome-Foundry/DnaCauldron
:alembic: Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
brsynth/RetroPathRL
Reinforcement Learning based bioretrosynthesis tool
khokao/synergetica
A modern, end-to-end genetic circuit design desktop app
Edinburgh-Genome-Foundry/Plateo
🤖 Python biolab automation library: parsers, report generators, picklist simulators, and more
Edinburgh-Genome-Foundry/Geneblocks
:diamond_shape_with_a_dot_inside: Find common blocks and differences between DNA sequences
hiyama341/teemi
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!
Edinburgh-Genome-Foundry/sequenticon
:space_invader: Generate identicons for DNA sequences with Python
usnistgov/lantern
Interpretable genotype-phenotype landscape modeling
Edinburgh-Genome-Foundry/Primavera
:cherry_blossom: Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
Edinburgh-Genome-Foundry/crazydoc
Read DNA sequences from colourful Microsoft Word documents
Edinburgh-Genome-Foundry/DnaWeaver
A route planner for DNA assembly
Koeng101/dnadesign
A Go package for designing DNA.
Edinburgh-Genome-Foundry/Caravagene
🎨 Python library to plot multi-part genetic constructs
Amyris/GslCore
Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.
Edinburgh-Genome-Foundry/genome_collector
:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
Gardner-BinfLab/TISIGNER-ReactJS
TISIGNER: Unleash the power of synthetic biology
barricklab/ostir
Software for predicting translation initiation rates in bacteria
Edinburgh-Genome-Foundry/CUBA
🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software
Edinburgh-Genome-Foundry/BandWagon
🎺 Plot DNA digestion band patterns with Python
Edinburgh-Genome-Foundry/SnapGeneReader
👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.
georgeoshardo/SyMBac
Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.
myjr52/dynsys.matlab.python
Book Website: Dynamic System Modelling & Analysis with MATLAB & Pythobn