ex-vivo analysis scripts
A repository of various scripts to read and analyze ex vivo whole cell recording data.
Dependencies
Repositories from Github user drchristianlee
Functions
Repositories from Github user christiankeine
HEKA_Patchmaster_Importer
Repositories from Github user raacampbell
shadedErrorBar
Measurements
These scripts can be used to measure action potential parameters as well as postsynaptic potential parameters. An easy to use gui collects user input to run the analysis desired. The most recent scripts run on data stored by Patchmaster Next (https://www.heka.com/downloads/downloads_main.html#down_patchmaster_next). To analyze this type of data, begin by running analysis.mat in the folder named Patchmaster Next. Deprecated code and scripts for previous Patchmaster versions are included but not supported.
Results
Results are stored in the variable named result
- HoldingCurr (holding current applied during experiment)
- peaks (peak indices)
- Rin (input resistance)
- V_mem (resting membrane potential)
- threshold (action potential thresholds)
- amp (action potential amplitude)
- width (width of action potential at half amplitude)
- ahp (afterhyperpolarization amplitude)
Results are measured from both the raw data and interpolated data.