drisso/zinbwave

Issues

• zinbInitialize() fails if softImpute does not find low-rank matrix with rank NCOL(W)

  #16 opened 6 years ago by drisso
  4

• Add vignette on working with Seurat

  #17 opened 7 years ago by drisso
  8

• Possible application of ZINB-WaVE model

  #20 opened 7 years ago by tibo1
  1

• Build model on subset of data

  #10 opened 7 years ago by jma1991
  5

• computeObservationalWeights should return weights as assay()

  #18 opened 7 years ago by drisso
  1

• Problems running zinbwave on a SLURM cluster using MPI nodes

  #19 opened 7 years ago by gbiele
  0

• zinbFit for simulated data when beta_pi and beta_mu are 0 in the generative model

  #21 opened 7 years ago by gbiele
  2

• fixing gamma_mu or don't estimate intercepts?

  #15 opened 7 years ago by gbiele
  3

• Extract normalized matrix after batch correction

  #12 opened 7 years ago by SharonWang
  5

• Y matrix in function zinbFit

  #13 opened 7 years ago by CcYyQq
  2

• Unable to extract normalized counts

  #11 opened 7 years ago by arvchi
  1

• Normalized dataset

  #7 opened 7 years ago by zji90
  4

• Core dump from RSEC()

  #3 opened 7 years ago by davismcc
  1

• Error from softImpute

  #9 opened 7 years ago by mkrzak
  4

• Check that input matrix is whole numbers

  #1 opened 7 years ago by drisso
  1

• Issues from archived version

  #2 opened 7 years ago by drisso
  0