dsturg

dsturg's Stars

• jlevy/the-art-of-command-line

  Master the command line, in one page

  153k2.8k25214.5k

• openai/openai-cookbook

  Examples and guides for using the OpenAI API

  Language:MDX59.3k8734589.4k

• nf-core/rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow885150646702

• mistralai/megablocks-public

  Language:Python8599054

• scverse/anndata

  Annotated data.

  Language:Python57514731152

• lh3/minigraph

  Sequence-to-graph mapper and graph generator

  Language:C4112911138

• TissueImageAnalytics/tiatoolbox

  Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

  Language:Python376714577

• ncbi/GeneGPT

  Code and data for GeneGPT.

  Language:Python37418627

• srush/Autodiff-Puzzles

  Language:Jupyter Notebook3686420

• scverse/muon

  muon is a multimodal omics Python framework

  Language:Python2151410730

• Illumina/DRAGMAP

  DRAGEN open-source mapper

  Language:C++155195730

• fayjustin/computational_biology

  course material

  Language:Jupyter Notebook1223021

• ismms-himc/clustergrammer2

  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.

  Language:HTML11547120

• sirselim/jetson_nanopore_sequencing

  A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

  10792511

• GeneDx/pgr-tk

  PGR-TK: Pangenome Research Tool Kit

  Language:Rust9211213

• iskandr/bcb731

  Defense Against the Dark Arts

  Language:Jupyter Notebook77601

• statsbomb/amf-open-data

  Free American football data from StatsBomb

  43707

• sirselim/guppy_parameter_optimiser

  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate

  Language:Shell31354

• maickrau/ribotin

  Language:C++302112

• luciorq/isoformic

  Isoform-level functional RNA-Seq analysis 🧬

  Language:R20111

• Xinglab/PEGASAS

  Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)

  Language:Python184611

• ucdavis/ecs132

  17918

• elolab/multisubjectDSanalysis

  Language:R14204

• biodlab/RODAN

  A fully convolutional architecture for basecalling nanopore RNA sequencing data

  Language:Python111103

• uc-cdis/sheepdog

  API for herding data submissions

  Language:Python11236517

• sirselim/GPU-musings

  A collection of my thoughts around GPUs for genomic analysis and sequencing

  4201

• FelixErnst/RNAmodR

  :package: RNAmodR: detection of post-transcriptional RNA modifications based on HTS data

  Language:R32160

• CBIIT/nci-gdc

  Language:Twig280

• ashleymaeconard/time2splice

  Method to identify temporal and sex-specific alternative splicing from multi-omic data, specifically RNA-seq + (CUT&RUN or ChIP-seq).

  Language:Shell1101

• josesho/awesome-visualization-research

  A list of recommended research papers and other readings on data visualization

  1200