dtabb73
Dave is a professor in the field of proteome informatics. He finds controlled vocabularies a bit mystifying. This old dog has a few tricks left in him.
Stellenbosch UniversityCape Town, South Africa
Pinned Repositories
Bruker-msAlign-exporter
Script by Kyle Brown to export msAlign files from QTOF data in Bruker DataAnalysis
MGF2msAlign
A Python script to convert MGF files to msAlign format, compatible with TopPIC
ProForma-Exporters
Tools for creating ProForma v2 reports from ProSight PD, TopPIC, MSPathFinderT, and pTop top-down ID software.
SixFrame-Translate
Read a FASTA transcriptome and output its six-frame translation
TDAuditor
Generates quality metrics and msAlign files from FreeStyle deconvolutions
XCalibur-Text-2-msAlign
Thermo's FreeStyle Xtract deconvolves a RAW file. This tool makes a TopPIC-compatible msAlign from the text.
Zorbit-Analyzer
A Python script to combine InterPro and ProteinOrtho data to annotate FASTA description lines for an RNA-Seq assembly
timsconvert
mzQC
Reporting and exchange format for mass spectrometry quality control data
FragPipe
A cross-platform proteomics data analysis suite
dtabb73's Repositories
dtabb73/ProForma-Exporters
Tools for creating ProForma v2 reports from ProSight PD, TopPIC, MSPathFinderT, and pTop top-down ID software.
dtabb73/Bruker-msAlign-exporter
Script by Kyle Brown to export msAlign files from QTOF data in Bruker DataAnalysis
dtabb73/MGF2msAlign
A Python script to convert MGF files to msAlign format, compatible with TopPIC
dtabb73/SixFrame-Translate
Read a FASTA transcriptome and output its six-frame translation
dtabb73/TDAuditor
Generates quality metrics and msAlign files from FreeStyle deconvolutions
dtabb73/XCalibur-Text-2-msAlign
Thermo's FreeStyle Xtract deconvolves a RAW file. This tool makes a TopPIC-compatible msAlign from the text.
dtabb73/Zorbit-Analyzer
A Python script to combine InterPro and ProteinOrtho data to annotate FASTA description lines for an RNA-Seq assembly