HUPO-PSI/mzQC

Issues

• Repository documentation

  #201 opened 3 years ago by bittremieux
  1

• github representation needs dust-up and proof-read

  #192 opened 5 months ago by mwalzer
  0

• Collection of QC tools

  #224 opened 7 months ago by bittremieux
  0

• Update examples to mzQC v1.0

  #225 opened 6 months ago by bittremieux
  2

• Remove QC CV from markup docs

  #195 opened 5 months ago by mwalzer
  0

• For metabo and set-of-runs example needs a PSI-MS CV terms (instead of QC CV

  #182 opened 5 months ago by mwalzer
  2

• Our set-of-runs example needs a CV term in PSI-MS

  #181 opened 5 months ago by mwalzer
  1

• CI for semantic validation of example files not working

  #220 opened 10 months ago by mwalzer
  0

• For non-proteomics MS QC it would be nice to have ..

  #232 opened 5 months ago by mwalzer
  3

• Provide guidelines on mzQC merging

  #235 opened 5 months ago by bittremieux
  0

• [CV request] PSM detail table

  #156 opened 10 months ago by mwalzer
  9

• Add guide to visualisation from metrics

  #215 opened 2 years ago by mwalzer
  4

• Some parent terms not found when loading qc-cv.obo

  #196 opened 2 years ago by biodavidjm
  2

• Default values in analysisSoftware for version and uri

  #199 opened 2 years ago by nilshoffmann
  2

• Discuss format for date-time fields in mzQC

  #213 opened 2 years ago by nilshoffmann
  4

• Logo for MS-Quality-hub

  #200 opened 3 years ago by nilshoffmann
  1

• terms requested in PSI-MS #117 used in our examples

  #180 opened 3 years ago by mwalzer
  1

• terms requested in PSI-MS #112 used in our examples

  #179 opened 3 years ago by mwalzer
  1

• terms requested in PSI-MS #113 used in our examples

  #178 opened 3 years ago by mwalzer
  1

• QC2 sample needs update

  #190 opened 3 years ago by mwalzer
  0

• mzML example still uses QC CV terms

  #185 opened 3 years ago by mwalzer
  3

• individual run example needs updating

  #188 opened 3 years ago by mwalzer
  2

• USI example uses wrong SHA term accession

  #186 opened 3 years ago by mwalzer
  0

• mtb example has 2 minor issues

  #184 opened 3 years ago by mwalzer
  1

• Protein/Peptide identified numbers. How to detail method?

  #150 opened 3 years ago by mwalzer
  3

• CV request guidelines

  #167 opened 3 years ago by bittremieux
  1

• [CV request] Min peaks for 50% of total spectra intensity

  #133 opened 3 years ago by mwalzer
  2

• QC2 sample example files use QC term already in MS

  #176 opened 3 years ago by mwalzer
  0

• Merge CV into PSI-MS CV

  #141 opened 3 years ago by bittremieux
  2

• Add more intermediate level classification of metrics

  #120 opened 3 years ago by sneumann
  1

• Improved browsing of qc-cv.obo

  #119 opened 3 years ago by sneumann
  8

• PSI-MS CV ambiguity: TIC

  #147 opened 3 years ago by mwalzer
  0

• PSI-MS CV ambiguity: Column type

  #148 opened 3 years ago by mwalzer
  0

• Missing relationship partner name

  #149 opened 3 years ago by mwalzer
  0

• Missing `def` stanza line for PCA table

  #153 opened 3 years ago by mwalzer
  0

• PSI-QC CV ambiguity: acquisition frequencies

  #151 opened 3 years ago by mwalzer
  0

• Missing quotes in `def` stanza line

  #152 opened 3 years ago by mwalzer
  1

• [CV request] DateTime of acquisition start/end

  #158 opened 3 years ago by mwalzer
  8

• Do we need to detail the sequence encoding in the peptide sequence column?

  #155 opened 3 years ago by mwalzer
  4

• Maybe add a rule for quotes in definitions?

  #146 opened 3 years ago by mwalzer
  1

• [CV request] Fraction of identified MS2 spectra

  #154 opened 3 years ago by mwalzer
  4

• Upgrade to OBO format version 1.4

  #140 opened 3 years ago by bittremieux
  2

• Submit CV to OLS

  #137 opened 3 years ago by bittremieux
  1

• PSI website

  #127 opened 3 years ago by bittremieux
  3

• logo is text only

  #123 opened 3 years ago by mwalzer
  3

• [CV request] We need a cv param for mzQC as a file (just like MS:1000584)

  #130 opened 4 years ago by mwalzer
  5

• [CV request] mzQC format

  #132 opened 4 years ago by mwalzer
  2

• Add userParam

  #126 opened 4 years ago by bittremieux
  7

• We have an issue with our import statements in the CV's obo

  #129 opened 4 years ago by mwalzer
  0

• [CV request] Retention time mean shift

  #121 opened 4 years ago by axelwalter
  5