duartemolha

clusterFAST

ClusterFAST is a tool for finding translocation in next generation sequencing data

cnvkit-cbsMethod

Copy number variant detection from targeted DNA sequencing

CoNVaDING_reload

Fork of the CoNVaDING software - Copy Number Variation Detection In NGS Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage NGS data

django-bootstrap4

Bootstrap 4 integration with Django.

ensembl

The Ensembl Core Perl API and SQL schema

ensembl-compara

The Ensembl Compara Perl API and SQL schema

ensembl-funcgen

Ensembl Funcgen Perl API and SQL schema

ensembl-rest-docker

This repo contains the code to dockerize a ensembl REST server on your own local machine. It allows the user to specify a different configuration to a locally hosted ensembl database and tweeking of the throtelling settings setup by default by ensembl for their own servers

ensembl-tools

Ensembl tools

cnvkit

Copy number variant detection from targeted DNA sequencing

duartemolha/CoNVaDING_reload

Fork of the CoNVaDING software - Copy Number Variation Detection In NGS Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage NGS data

duartemolha/solar_analysis

streamlit app for analysing solar output

duartemolha/clusterFAST

ClusterFAST is a tool for finding translocation in next generation sequencing data

duartemolha/cnvkit-cbsMethod

Copy number variant detection from targeted DNA sequencing

duartemolha/django-bootstrap4

Bootstrap 4 integration with Django.

duartemolha/ensembl

The Ensembl Core Perl API and SQL schema

duartemolha/ensembl-compara

The Ensembl Compara Perl API and SQL schema

duartemolha/ensembl-funcgen

Ensembl Funcgen Perl API and SQL schema

duartemolha/ensembl-rest-docker

This repo contains the code to dockerize a ensembl REST server on your own local machine. It allows the user to specify a different configuration to a locally hosted ensembl database and tweeking of the throtelling settings setup by default by ensembl for their own servers

duartemolha/ensembl-tools

Ensembl tools

duartemolha/ensembl-variation

The Ensembl Variation Perl API and SQL schema

duartemolha/matchclips2

paired end distance, split reads matching, read depth are used to detect and precisely locate structure variations

duartemolha/mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

duartemolha/smash-paper

code for mapping and binning SMASH genomic data

duartemolha/wisexome