dverac
Bioinformatician at the Bioinformatics core of CRI at U Chicago. Ph.D. in Computational Biology and Bioinformatics.
University of chicago
Pinned Repositories
flu_strain_compare
Visualizing mutations and PNGS changes between two strains
ClonalFrameML
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
data-emporium
A place to keep track of public or confidential datasets available to the Cobey Lab.
FitnessInference
Prediction fitness of leaves on a genealogical tree
my_r_functions
R functions shared between projects
SNAPP
SNAPP sequencing data pipeline - haplotypes from targeted amplicon sequencing
SNAPP.div
Genetic diversity functions for SNAPP pipeline
treeImbalance
An R package for detecting asymmetry in time-sampled phylogenetic trees.
treetime
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
FIRE
A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
dverac's Repositories
dverac/ClonalFrameML
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
dverac/data-emporium
A place to keep track of public or confidential datasets available to the Cobey Lab.
dverac/FitnessInference
Prediction fitness of leaves on a genealogical tree
dverac/my_r_functions
R functions shared between projects
dverac/SNAPP
SNAPP sequencing data pipeline - haplotypes from targeted amplicon sequencing
dverac/SNAPP.div
Genetic diversity functions for SNAPP pipeline
dverac/treeImbalance
An R package for detecting asymmetry in time-sampled phylogenetic trees.
dverac/treetime
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction