dynverse: benchmarking, constructing and interpreting single-cell trajectories
The dynverse is an open set of packages to benchmark, construct and interpret single-cell trajectories. See https://dynverse.org for an overview
The dynverse
Pinned Repositories
anndata
Annotated multivariate observation data in R
babelwhale
Talking to Docker and Singularity containers
dynbenchmark
Comparison of methods for trajectory inference on single-cell data 🥇
dyngen
Simulating single-cell data using gene regulatory networks 📠
dynguidelines
Selecting the optimal trajectory inference based on a given dataset and user input 🔮
dynmethods
A collection of 50+ trajectory inference methods within a common interface 📥📤
dyno
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
dynplot
Visualising single-cell trajectories, including comparisons between two models 📈
dynverse
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
lmds
Landmark Multi-Dimensional Scaling
dynverse: benchmarking, constructing and interpreting single-cell trajectories's Repositories
dynverse/dynbenchmark
Comparison of methods for trajectory inference on single-cell data 🥇
dynverse/dyno
Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕
dynverse/dynmethods
A collection of 50+ trajectory inference methods within a common interface 📥📤
dynverse/dyngen
Simulating single-cell data using gene regulatory networks 📠
dynverse/dynverse
A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
dynverse/anndata
Annotated multivariate observation data in R
dynverse/dynplot
Visualising single-cell trajectories, including comparisons between two models 📈
dynverse/babelwhale
Talking to Docker and Singularity containers
dynverse/dynwrap
A common data format and inference environment for single-cell trajectories 📦
dynverse/lmds
Landmark Multi-Dimensional Scaling
dynverse/dyndimred
Dimred methods for TI
dynverse/dynbenchmark_results
Contains the results from the dynbenchmark evaluation, see https://github.com/dynverse/dynbenchmark
dynverse/dyngen_manuscript
dynverse/dynutils
Common Functionality for the 'dynverse' Packages
dynverse/dynparam
dynverse/dyncli
CLI helper package for creating TI containers
dynverse/ti_paga
dynverse/ti_scorpius
dynverse/dynplot2
A grammar of graphics for single-cell trajectories 📈
dynverse/dynfeature
Extracting relevant features from single-cell trajectories 🎯
dynverse/dynio
dynverse/dynsite
Generator for the dynverse website at dynverse.github.io
dynverse/dynverse.github.io
Hub website for the dynverse, pointing visitors towards the different repositories and app
dynverse/proxyC
R package for large-scale similarity/distance computation
dynverse/SingleCellOpenProblems
Formalizing and benchmarking open problems in single-cell genomics
dynverse/ti_cellrouter
dynverse/ti_forks
dynverse/ti_monocle3
dynverse/ti_slingshot
dynverse/travis_package_cacher
Helper repository to make daily caches of dynverse packages