dynverse/dynwrap

Issues

• Error to open website: http://guidelines.dynverse.org

  #165 opened a year ago by Tina-Siqi
  2

• Evaluating a TI method

  #156 opened 4 years ago by SirKuikka
  1

• Error of dataset path parameter under Ubuntu18.04 when inferring trajectories

  #164 opened 2 years ago by duohongrui
  0

• Documentation on the usage of Gene Regulatory Networks

  #163 opened 3 years ago by ftucos
  0

• memory issues

  #157 opened 4 years ago by skim245
  1

• wrap_expression function reverse feature and cell ids from Seurat objects

  #162 opened 3 years ago by celinech
  1

• Seurat Object Error

  #161 opened 3 years ago by absrmzhr
  0

• How set seurat3.0 object as the input?

  #150 opened 5 years ago by JFan-bio
  3

• improvements for `add_root()`

  #160 opened 3 years ago by rcannood
  0

• Even a simple rooting doesnt work

  #149 opened 4 years ago by zouter
  0

• Also allow a named vector for groups_id prior information

  #154 opened 4 years ago by zouter
  0

• Simplify trajectory does not work with dimred projection

  #153 opened 4 years ago by zouter
  1

• Flip edges leads to all NAs in dimred_segment_progressions

  #152 opened 4 years ago by zouter
  1

• Milestone labelling doesnt work with sparse matrices

  #151 opened 4 years ago by zouter
  0

• rooting and pseudotime calculation need some work

  #130 opened 5 years ago by zouter
  2

• divergence regions when rooting

  #148 opened 5 years ago by rcannood
  0

• Pseudotime calculation after rooting produces Inf scores

  #139 opened 5 years ago by jma1991
  5

• Complete documentation

  #144 opened 5 years ago by zouter
  0

• Add ability to postprocess (i.e. root & add directionality) using rna velocity

  #115 opened 5 years ago by zouter
  0

• Add ways to automatically determine certain prior information, such as start cells

  #75 opened 6 years ago by zouter
  3

• R cutting off error message

  #142 opened 5 years ago by zouter
  0

• "use_priors" is invalid when running ti_paga and ti_paga_tree

  #140 opened 5 years ago by phitlingt
  3

• debugging "Error: Error during trajectory inference"

  #132 opened 5 years ago by celinesin
  5

• Questions about add_dimred

  #137 opened 5 years ago by QidiFeng
  1

• Show what changes when using one of the `add_` functions

  #136 opened 5 years ago by liesbmar
  0

• Add closest cell calculation

  #72 opened 5 years ago by zouter
  0

• Add ability to use rna velocity as input

  #112 opened 5 years ago by zouter
  0

• Add documentation discussing the different wrapper types

  #124 opened 5 years ago by zouter
  1

• Sink still not removed upon exit

  #128 opened 5 years ago by zouter
  0

• Improve debugging capabilities

  #127 opened 5 years ago by zouter
  1

• Add back script to generate allowed inputs/outputs

  #126 opened 5 years ago by zouter
  1

• Add support for sparse matrices

  #74 opened 5 years ago by zouter
  4

• Harmonise "model" variable names

  #122 opened 5 years ago by zouter
  4

• run r function method in separate thread

  #109 opened 5 years ago by rcannood
  4

• Allow communication with docker through rzmq

  #57 opened 5 years ago by zouter
  1

• Fully remove paramhelpers and create own helper functions

  #103 opened 5 years ago by rcannood
  1

• Problems with infer_trajectory when interupting

  #108 opened 5 years ago by zouter
  1

• Error: No such image: dynverse/ti_slingshot

  #113 opened 5 years ago by blancha
  1

• Fix duplicate cell_ids and milestone_ids

  #99 opened 6 years ago by zouter
  4

• Allow params to be NULLable

  #41 opened 6 years ago by rcannood
  4

• Fails to install dependencies after running dynwrap::infer_trajectories with umap

  #100 opened 6 years ago by PGuen
  3

• Problems with cell graph

  #89 opened 6 years ago by zouter
  0

• Clean up prior information generation

  #83 opened 6 years ago by zouter
  0

• Clean up add_prior_information()

  #84 opened 6 years ago by rcannood
  0

• Print the stderr if there was a system command error

  #79 opened 6 years ago by zouter
  0

• Useful error when prior are missing

  #73 opened 6 years ago by zouter
  0

• Add more tests to simplify_trajectory and simplify_igraph_network

  #76 opened 6 years ago by rcannood
  0

• Make method specific dependencies more user friendly and maintainable

  #43 opened 6 years ago by zouter
  1

• Test dynwrap on windows using AppVeyor

  #45 opened 6 years ago by zouter
  1

• Add debugging section to docker vignette

  #44 opened 6 years ago by zouter
  0