memory issues
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I'm trying to run ti_paga and getting memory issues as below
model = dynwrap::infer_trajectory(dataset, ti_paga(), verbose = TRUE)
Executing 'paga' on '20200507_013618__data_wrapper__wvr0AOl9GO'
With parameters: list(filter_features = TRUE, n_neighbors = 15L, n_comps = 50L, n_dcs = 15L, resolution = 1L, embedding_type = "fa", connectivity_cutoff = 0.05)
inputs: counts
priors : start_id
Input saved to /tmp/folders/g0/w9p16d056l1d15r38h9r2y8m0000gn/T//RtmpCfNfyx/file84bf5218c660/ti
Running method using babelwhale
Running /usr/local/bin/docker run --name
20200507_025418__container__QQk5pCSMeC -e 'TMPDIR=/tmp2' --workdir
/ti/workspace -v
'/tmp/folders/g0/w9p16d056l1d15r38h9r2y8m0000gn/T//RtmpCfNfyx/file84bf5218c660/ti:/ti'
-v
'/tmp/folders/g0/w9p16d056l1d15r38h9r2y8m0000gn/T//RtmpCfNfyx/file84bf5887f2bb/tmp:/tmp2'
'dynverse/ti_paga:v0.9.9.05' --dataset /ti/input.h5 --output
/ti/output.h5 --use_priors all
Container was killed, possibly because it ran out of memory (error code 137)Error: Error during trajectory inference, see output above ↑↑↑
you may want to adjust the docker container memory limit!