Pinned Repositories
funkyheatmap
Visualising data frames as funky heatmaps 📊
openpipeline
openproblems
Formalizing and benchmarking open problems in single-cell genomics
GillespieSSA2
Gillespie’s Stochastic Simulation Algorithm for Impatient People ⌛
gng
An R/C++ implementation of the Growing Neural Gas algorithm
princurve
Fits a Principal Curve in Arbitrary Dimension ⤵
qsub
Parallellising lapply() by submitting them to gridengine clusters
SCORPIUS
Linear trajectory inference for single-cell RNA-seq
anndataR
AnnData interoperability in R
viash
script + metadata = standalone component
rcannood's Repositories
rcannood/SCORPIUS
Linear trajectory inference for single-cell RNA-seq
rcannood/princurve
Fits a Principal Curve in Arbitrary Dimension ⤵
rcannood/qsub
Parallellising lapply() by submitting them to gridengine clusters
rcannood/AGAT
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
rcannood/AliNe
Nextflow Alignment Pipeline
rcannood/example
rcannood/example-automount
rcannood/funkyheatmap-experiments
rcannood/hdf5r
rcannood/joss-papers
Accepted JOSS papers
rcannood/lamin-docs
rcannood/lamindb
A data framework for biology.
rcannood/lazappi.id.au
My personal website
rcannood/Marlin
Marlin is an optimized firmware for RepRap 3D printers based on the Arduino platform. Many commercial 3D printers come with Marlin installed. Check with your vendor if you need source code for your specific machine.
rcannood/mediakit
A set of utilities to use with your Solid apps.
rcannood/muon
muon is a multimodal omics Python framework
rcannood/openapi-generator
OpenAPI Generator allows generation of API client libraries (SDK generation), server stubs, documentation and configuration automatically given an OpenAPI Spec (v2, v3)
rcannood/pkgdown
Generate static html documentation for an R package
rcannood/printerboi-marlin-patcher
rcannood/quarto-cli
Open-source scientific and technical publishing system built on Pandoc.
rcannood/quarto-web
Quarto website
rcannood/rapiclient
Dynamic Open API (Swagger) Client for R
rcannood/reviewers
Reviewer management system for open access journals
rcannood/s3
More efficient downloading and usage of files hosted on AWS S3
rcannood/scDesign3
scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
rcannood/schemastore
A collection of JSON schema files including full API
rcannood/solid-project
rcannood/solid-ui
Beautifully designed components. Built with Kobalte & corvu. Styled with Tailwind CSS.
rcannood/test-mermaid-across-quarto-versions
rcannood/viash
script + metadata = standalone component