Analysis for the publication: Developmental consequences of defective ATG7-mediated autophagy in humans
This repository contains the RNA-seq analysis for the publication: Developmental consequences of defective ATG7-mediated autophagy in humans
The raw scripts to perform the aberrant expression (OUTRIDER & DESeq2) and aberrant splicing (dasper) analysis sit in scripts.
The index.Rmd contains some background, methods and code for tidying the raw outputs and generating figures/tables.