Pinned Repositories
colocalisation
This repo contains a nextflow pipeline to do colocalisation analysis of QTLs against GWASs
eQTL-Catalogue-resources
eQTL-Catalogue-website
Get up and running with EBI-themed Jekyll fast (rolled with gh-pages in mind, clone/fork suggested)
eQTL-SumStats
eQTL Catalogue Summary Statistics
genimpute
Portable genotype imputation pipeline used by the eQTL Catalogue
genotype_qc
Workflows for performing genotype QC before and after imputation
qcnorm
This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes
qtlmap
Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
rnaseq
RNA-seq quantification pipeline used by the eQTL Catalogue
susie-workflow
Nextflow workflow for applying SuSiE finemapping model to a large number of molecular QTLs
eQTL Catalogue's Repositories
eQTL-Catalogue/qtlmap
Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
eQTL-Catalogue/eQTL-Catalogue-resources
eQTL-Catalogue/susie-workflow
Nextflow workflow for applying SuSiE finemapping model to a large number of molecular QTLs
eQTL-Catalogue/qcnorm
This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes
eQTL-Catalogue/genimpute
Portable genotype imputation pipeline used by the eQTL Catalogue
eQTL-Catalogue/rnaseq
RNA-seq quantification pipeline used by the eQTL Catalogue
eQTL-Catalogue/genotype_qc
Workflows for performing genotype QC before and after imputation
eQTL-Catalogue/eQTL-SumStats
eQTL Catalogue Summary Statistics
eQTL-Catalogue/colocalisation
This repo contains a nextflow pipeline to do colocalisation analysis of QTLs against GWASs
eQTL-Catalogue/eQTL-Catalogue-website
Get up and running with EBI-themed Jekyll fast (rolled with gh-pages in mind, clone/fork suggested)
eQTL-Catalogue/qtl_norm_qc
This repo contains necessary scripts to run Quality Control (QC) and Normalisation on phenotype count matrices generated by rnaseq pipeline.
eQTL-Catalogue/eQTL-sumstats-file-validator
eQTL-Catalogue/federated-analysis