eQTL-Catalogue/qtlmap

Issues

• Empty files generated in the 'run_nominal' step

  #19 opened 3 months ago by isaartiga
  0

• The position field in finemapping results is double instead of integer

  #17 opened 10 months ago by kerimoff
  0

• Incoprorate PEER factors as covariates in the analysis

  #12 opened 3 years ago by kauralasoo
  2

• Modify connected component filtering code to export summary statistics for additional transcript-level QTLs

  #16 opened 2 years ago by kauralasoo
  0

• Double check that median_tpm values are correctly added to the summary statistics files

  #15 opened 2 years ago by kauralasoo
  2

• extract_lead_cc_signal process optimisation

  #13 opened 3 years ago by kerimoff
  0

• Make sure that the output files follow the exact same naming scheme as used by the eQTL Catalogue FTP.

  #7 opened 4 years ago by kauralasoo
  1

• Explain --varid_rsid_map_file in the documentation

  #8 opened 4 years ago by kauralasoo
  0

• tx, txrev and exon summary statistics files have NAs in the median_tpm column

  #5 opened 4 years ago by kauralasoo
  1

• AN and AC fields are switched in the output files

  #6 opened 4 years ago by kauralasoo
  1

• Broken inputs_expl.md link in docs/usage.md

  #3 opened 4 years ago by allumik
  0

• Duplicate rows in the fastQTL output?

  #1 opened 4 years ago by kauralasoo
  1

• Produce an informative error message if more than one QTL group present after filtering.

  #2 opened 4 years ago by kauralasoo
  0