incorrect KEGG Compound identifiers
egonw opened this issue · 2 comments
egonw commented
In BridgeDb I get a warning that the following KEGG Compound identifiers have an unexpected format. I tried two, and indeed neither worked. The full list is:
$ head -1 ~/Downloads/chebi_database_accession.tsv
ID COMPOUND_ID SOURCE TYPE ACCESSION_NUMBER
$ grep "C-" ~/Downloads/chebi_database_accession.tsv | grep "KEGG COMPOUND"
1057058 169879 KEGG COMPOUND KEGG COMPOUND accession C-1079
1066416 173370 KEGG COMPOUND KEGG COMPOUND accession C-1041
1066419 173371 KEGG COMPOUND KEGG COMPOUND accession C-5141
1076346 177030 KEGG COMPOUND KEGG COMPOUND accession C-8853
1076129 176967 KEGG COMPOUND KEGG COMPOUND accession C-4569
1073463 176440 KEGG COMPOUND KEGG COMPOUND accession C-4561
1077513 177494 KEGG COMPOUND KEGG COMPOUND accession C-8875
1078805 177923 KEGG COMPOUND KEGG COMPOUND accession C-8514
1088629 182011 KEGG COMPOUND KEGG COMPOUND accession C-4179
1081362 179151 KEGG COMPOUND KEGG COMPOUND accession C-1689
1081564 179249 KEGG COMPOUND KEGG COMPOUND accession C-5011
1087520 180996 KEGG COMPOUND KEGG COMPOUND accession C-1031
1083262 179946 KEGG COMPOUND KEGG COMPOUND accession C-5116
1088057 181462 KEGG COMPOUND KEGG COMPOUND accession C-1160
1090745 183289 KEGG COMPOUND KEGG COMPOUND accession C-5733
1085610 180552 KEGG COMPOUND KEGG COMPOUND accession C-6045
1106176 191088 KEGG COMPOUND KEGG COMPOUND accession C-9227
1102416 189210 KEGG COMPOUND KEGG COMPOUND accession C-8660
1115526 194669 KEGG COMPOUND KEGG COMPOUND accession C-5242
amalik01 commented
These KEGG accessions came from the MetaboLights database. I have now removed all of the above KEGG accessions. Thank you.
egonw commented
thank!