ebi-gene-expression-group/atlas-web-single-cell

Issues

• "Colour plot by" drop down corresponding endpoints(cluster and metadata) inconsistently returning 400 error when drop down options switched from metadata to k value and vice versa

  #363 opened a year ago by upendrakumbham
  0

• None of the tabs appearing on the experiment page when plotTypesAndOptions empty in the content payload

  #362 opened a year ago by ke4
  1

• Showing gray color plot expression when we click on specific experiment for the first time page load

  #361 opened a year ago by upendrakumbham
  2

• Example search doesn’t return cell types

  #345 opened 2 years ago by alfonsomunozpomer
  2

• Make the json/build endpoint up-to-date

  #365 opened a year ago by ke4
  1

• https://wwwdev.ebi.ac.uk/gxa/sc/experiments/E-HCAD-30/results/tsne- Cellplot page - 400 errors

  #357 opened a year ago by upendrakumbham
  2

• Add an AnnData experiment to our local SCXA

  #340 opened 2 years ago by ke4
  12

• Display gut anatomogram(s) in SCXA

  #358 opened a year ago by ke4
  0

• If a cell type contains a `/` in its name on the wheel its heat map URL will be malformed

  #328 opened a year ago by ke4
  1

• Filter out null element from the resulted list from cell types endpoint

  #356 opened a year ago by ke4
  2

• Number of assays column seems to be always empty in the gene search result table

  #331 opened 2 years ago by ke4
  2

• In SCXA main page under Tools section the t-SNE plot widget point to a deprecated URL

  #343 opened 2 years ago by ke4
  2

• Too much recursion error when searching for Gallus gallus metadata

  #278 opened 2 years ago by alfonsomunozpomer
  1

• Gene search filter should not contains Species filter if there is only 1 species available

  #326 opened 2 years ago by ke4
  1

• Calculate the experiment number based on database rather than hard-coded

  #295 opened 2 years ago by lingyun1010
  1

• Experiment's link address is wrong in the top gene's heat map

  #327 opened 2 years ago by ke4
  1

• Fix tsne plot endpoint with proper requiredParams check

  #320 opened 2 years ago by lingyun1010
  0

• Issue: labels cut off in anatomogram heatmap

  #266 opened 2 years ago by ngeorgeebi
  2

• Set up build, CI/CD on GitHub for SCXA with GitHub Actions

  #321 opened 2 years ago by ke4
  1

• Update Readme under troubleshooting section

  #312 opened 2 years ago by upendrakumbham
  0

• Implement metadata search on Cambridge Cell Atlas

  #293 opened 2 years ago by lingyun1010
  0

• Is readme out of date?

  #302 opened 2 years ago by scriptbotprime
  0

• Not applicable cell type shows in the cell type results

  #258 opened 2 years ago by pcm32
  0

• Add species as a request parameter for metadata search endpoint

  #294 opened 2 years ago by lingyun1010
  0

• Add an endpoint to get cell types for a gene search (check if good to merge these three into one endpoint)

  #298 opened 2 years ago by ke4
  1

• Update organ anatomogram with gut views

  #288 opened 2 years ago by lingyun1010
  0

• No colouring in experiments without inferred cell type ontology/authors labels

  #282 opened 2 years ago by alfonsomunozpomer
  0

• Move gene search result into an empty tab like metadata search result in SC

  #286 opened 2 years ago by lingyun1010
  0

• Issue: Kuppfer cell is not highlighted in the liver anatomogram even when there are inferred cell types

  #267 opened 3 years ago by ngeorgeebi
  1

• Add an endpoint to check if a gene search is a marker gene in any experiments

  #271 opened 2 years ago by ke4
  0

• No metadata suggestions are shown

  #268 opened 3 years ago by alfonsomunozpomer
  1

• Fix layout of Publications in the home page

  #274 opened 2 years ago by alfonsomunozpomer
  0

• Fix query for getting experiment accessions for marker gene IDs

  #281 opened 2 years ago by alfonsomunozpomer
  0

• Retina shown as result for lung cancer

  #251 opened 3 years ago by sfexova
  5

• [anatomograms] Kupffer cells and others not appearing in liver anatomogram

  #275 opened 2 years ago by sfexova
  2

• Experiment collection links in featured experiments box are not enclosed in quotes

  #260 opened 3 years ago by alfonsomunozpomer
  0

• Gene search with “Any” species sets request parameter `species=undefined` and returns no results

  #261 opened 3 years ago by alfonsomunozpomer
  0

• Duplicate metadata suggestions

  #269 opened 3 years ago by alfonsomunozpomer
  0

• Metadata search: Hint to the users that conditions can be searched now

  #246 opened 3 years ago by pcm32
  5

• Issue: missing search results in cell type wheel

  #265 opened 3 years ago by ngeorgeebi
  0

• [cell type wheel] make the cell type marker gene heatmap disappear if users jump to different sections of the wheel

  #255 opened 3 years ago by sfexova
  1

• Empty colorscale after PDF download of heatmap [cell type wheel]

  #247 opened 3 years ago by pmb59
  1

• make exp accessions in cell type wheel marker table into hyperlinks

  #250 opened 3 years ago by sfexova
  2

• [cell type wheel] heatmap for human cell type shows results from mice

  #254 opened 3 years ago by sfexova
  1

• experiment accession number gets cropped sometimes in cell type wheel marker gene table

  #252 opened 3 years ago by sfexova
  4

• `type X cell marker genes` text sometimes overlaps the download button on the metadata results page

  #248 opened 3 years ago by pcm32
  0

• remove metadata suggestions from the Gene search box on the Gene search tab on SCEA

  #249 opened 3 years ago by sfexova
  0

• Routing issues make the coloury by metadata functionality fail

  #238 opened 3 years ago by pcm32
  1

• Adapt to the use of new authors cell type labels, moving away from inferred cell type labels to new "authors cell type" and "authors cell type - ontology labels"

  #240 opened 3 years ago by pcm32
  2

• Desire to have arbitrary parameter definitions in scxa_coords

  #226 opened 3 years ago by pinin4fjords
  2