/scopyon

:microscope: Monte Carlo simulation toolkit for bioimaging systems

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

scopyon

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🔬 Monte Carlo simulation toolkit for bioimaging systems

Documentation

See https://scopyon.readthedocs.io/ for details.

Requirements

For scopyon, Python 3 and its libraries, numpy, scipy, matplotlib, pyyaml and pint, are required. Installation of scikit-image, pillow and plotly is also recommended.

Installation

$ pip install scopyon

or

$ python setup.py test install

Quick start

$ python examples/twocolor.py

TIRF Image

License

scopyon is licensed under the terms of BSD-3-Clause (see LICENSE).

Citation

If this package contributes to your work, please cite the followings.

https://doi.org/10.1371/journal.pone.0130089