ecell

Pinned Repositories

dash-pathway
A Dash component for pathway visualization
Language:Python2 5 190
ecell3
Language:Python8 10 125
ecell4
An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
Language:Python18 8 649
ecell4_base
An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
Language:C++63 12 23223
ecell4_docs
The Sphinx source for https://ecell4.e-cell.org/
Language:Jupyter Notebook2 3 185
ECell_Dive
Language:C#3 4 00
ECell_Engine
Real-time simulation engine for biological systems
Language:C++2 4 01
scopyon
:microscope: Monte Carlo simulation toolkit for bioimaging systems
Language:Python7 14 94
spatiocyte
Language:C++3 12 22
transomics2cytoscape
Get and integrate the pathways to create a 3D transomics network visualization
Language:R5 9 30

ecell's Repositories

ecell/ecell4_base
An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
Language:C++63 12 23223
ecell/ecell4
An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
Language:Python18 8 649
ecell/scopyon
:microscope: Monte Carlo simulation toolkit for bioimaging systems
Language:Python7 14 94
ecell/transomics2cytoscape
Get and integrate the pathways to create a 3D transomics network visualization
Language:R5 9 30
ecell/ECell_Dive
Language:C#3 4 00
ecell/spatiocyte
Language:C++3 12 22
ecell/dash-pathway
A Dash component for pathway visualization
Language:Python2 5 190
ecell/ecell4_docs
The Sphinx source for https://ecell4.e-cell.org/
Language:Jupyter Notebook2 3 185
ecell/ECell_Engine
Real-time simulation engine for biological systems
Language:C++2 4 01
ecell/greens_functions
Language:C++1 18 5
ecell/kosmogora
Language:Jupyter Notebook1 5 41
ecell/bioimage_workflows
Language:Python6 42
ecell/blog
The Hugo source for https://blog.e-cell.org
Language:HTML5 0
ecell/dash-bio
Open-source bioinformatics components for Dash
Language:Python1 0
ecell/docker4azure
Language:Dockerfile7 0
ecell/ecell-website
The Sphinx source for https://www.e-cell.org/
Language:Python11 4
ecell/ecell4-docs-ja
Language:Python3 0
ecell/ecell4-mac
A repository for Mac OS X E-Cell4 wheels [Archived, We moved from wheel to conda package.]
Language:Shell9 21
ecell/ecell4_base-feedstock
A conda-smithy repository for ecell4_base.
Language:Shell1 0
ecell/ecell4_docs_manylinux
2 0
ecell/ecell4_hugo
5 0
ecell/ecell_hugo
Language:CSS7 11
ecell/greens_functions11
Language:C++5 0
ecell/id2id
Language:Python5 20
ecell/kedro-bioimage
Language:Python6 5
ecell/manylinux-dockerimage
Base Docker image for building ecell4_base manylinux wheel
Language:Dockerfile5 0
ecell/SigmoID
A Xojo/python tool for identification and annotation of transcription factor binding sites in bacterial genomes
Language:Xojo0 0
ecell/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python1 0
ecell/transomics2cytoscape-input-datasets
4 0
ecell/transomics2cytoscape-py
Automation of the transomics 2.5D network visualization
Language:Python4 0