edroaldo/cellrouter

Issues

• processtrajectories error

  #34 opened 3 years ago by widsquid
  1

• Gene filtering method & count formats

  #18 opened 3 years ago by AswinSSoman
  5

• suitable Normalization for cellrouter - scran vs scone vs SCnorm

  #17 opened 3 years ago by AswinSSoman
  5

• Java error in "findPaths"

  #33 opened 3 years ago by AndreaRP
  0

• could not find function "graph.data.frame" when running buildGRN on example code

  #32 opened 3 years ago by AndreaRP
  3

• in Linux -- Could not find or load main class cellrouter.CellRouter

  #31 opened 4 years ago by xyang2uchicago
  1

• "could not find function"

  #30 opened 4 years ago by yudonglin506311858
  0

• processTrajectories

  #27 opened 5 years ago by fengyun198503
  2

• findPaths can't find cellrouter main class

  #29 opened 5 years ago by TobiasBB
  0

• I am getting all error when coming back to cellrouter after a year

  #28 opened 5 years ago by beginner984
  2

• Overlay TSNE with Cellrouter trajectory

  #21 opened 6 years ago by hgb1111
  4

• Error in processTrajectories

  #25 opened 5 years ago by cjpark85
  8

• Heatmaps with multiple metadata annotations

  #26 opened 5 years ago by AMA111
  2

• findPaths: argument 1 is not a vector

  #24 opened 5 years ago by araksm
  1

• Seurat to cellrouter error

  #22 opened 6 years ago by ghoshal
  3

• mean.p and mean.np stand for?

  #23 opened 6 years ago by AMA111
  2

• plotPathHeatmap function "invalid 'row.names' length"

  #20 opened 6 years ago by hgb1111
  5

• PlotTrajectory without smoothening? Genes that should be relatively constant are not?

  #19 opened 6 years ago by hgb1111
  1

• Creating a clean featureplot

  #16 opened 6 years ago by beginner984
  0

• cellrouter addInfo

  #15 opened 6 years ago by kunUCSD
  15

• Using seurat for cellrouter trajectory analysis

  #13 opened 6 years ago by fereshtehizadi
  102

• Whether can I use specific genes instead of PCto construct

  #14 opened 6 years ago by zorrodong
  9

• Function findsubpopulations

  #5 opened 7 years ago by LaptopY
  13

• processtrajectories error

  #9 opened 7 years ago by natlasy
  23

• regulate module

  #12 opened 6 years ago by JianmeiZhong
  3

• pretty low GRN scores obtained

  #8 opened 7 years ago by JianmeiZhong
  14

• Too many subpopulations?

  #10 opened 6 years ago by MingBit
  10

• Error: ggplot2 doesn't know how to deal with data of class igraph

  #11 opened 6 years ago by JianmeiZhong
  2

• issues on davidclustering

  #6 opened 7 years ago by JianmeiZhong
  1

• Error in processtrajectories

  #4 opened 7 years ago by MingBit
  5

• Matrix

  #3 opened 7 years ago by LaptopY
  1

• function processtrajectories

  #2 opened 7 years ago by LaptopY
  2

• findpaths function output nearly empty files

  #1 opened 7 years ago by JianmeiZhong
  11